Atomistry » Krypton » PDB 1c61-6zma » 1c6g
Atomistry »
  Krypton »
    PDB 1c61-6zma »
      1c6g »

Krypton in PDB 1c6g: T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton

Enzymatic activity of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton

All present enzymatic activity of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton:
3.2.1.17;

Protein crystallography data

The structure of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton, PDB code: 1c6g was solved by M.L.Quillin, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.00 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.974, 60.974, 97.142, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1c6g:

The structure of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Krypton Binding Sites:

The binding sites of Krypton atom in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton (pdb code 1c6g). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 2 binding sites of Krypton where determined in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton, PDB code: 1c6g:
Jump to Krypton binding site number: 1; 2;

Krypton binding site 1 out of 2 in 1c6g

Go back to Krypton Binding Sites List in 1c6g
Krypton binding site 1 out of 2 in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr500

b:27.1
occ:0.23
CB A:ALA99 3.7 13.3 1.0
O A:LEU84 3.9 19.2 1.0
CD2 A:LEU84 4.0 21.4 1.0
N A:TYR88 4.0 14.6 1.0
CB A:VAL87 4.1 22.0 1.0
CB A:TYR88 4.1 17.1 1.0
CG1 A:VAL87 4.2 19.9 1.0
CA A:TYR88 4.3 17.0 1.0
CD2 A:LEU118 4.4 24.0 1.0
CB A:LEU84 4.4 18.5 1.0
CA A:LEU84 4.5 15.7 1.0
C A:LEU84 4.5 17.9 1.0
C A:VAL87 4.6 14.0 1.0
CG A:LEU84 4.8 23.9 1.0
CD2 A:TYR88 4.9 18.1 1.0
CG2 A:ILE78 4.9 17.3 1.0
CA A:VAL87 4.9 18.3 1.0
CD1 A:LEU91 4.9 18.1 1.0

Krypton binding site 2 out of 2 in 1c6g

Go back to Krypton Binding Sites List in 1c6g
Krypton binding site 2 out of 2 in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr501

b:19.8
occ:0.12
CD2 A:LEU118 3.2 24.0 1.0
CD1 A:LEU121 3.9 20.6 1.0
CD2 A:LEU133 4.0 18.6 1.0
SD A:MET102 4.0 22.2 1.0
CB A:PHE114 4.0 18.3 1.0
CG A:LEU118 4.0 35.3 1.0
CG1 A:VAL111 4.1 18.8 1.0
CB A:SER117 4.2 15.0 1.0
CE A:MET102 4.3 21.7 1.0
CG A:PHE114 4.5 25.9 1.0
CD2 A:PHE114 4.5 28.6 1.0
N A:LEU118 4.5 16.6 1.0
CA A:LEU118 4.8 20.8 1.0
C A:SER117 4.8 20.4 1.0
O A:PHE114 4.8 21.0 1.0
O A:VAL111 4.8 21.2 1.0
CZ A:PHE153 5.0 19.4 1.0

Reference:

M.L.Quillin, W.A.Breyer, I.J.Griswold, B.W.Matthews. Size Versus Polarizability in Protein-Ligand Interactions: Binding of Noble Gases Within Engineered Cavities in Phage T4 Lysozyme. J.Mol.Biol. V. 302 955 2000.
ISSN: ISSN 0022-2836
PubMed: 10993735
DOI: 10.1006/JMBI.2000.4063
Page generated: Sun Jan 24 17:57:33 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy