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Krypton in PDB 1o1h: Structure of Glucose Isomerase Derivatized with Kr.

Enzymatic activity of Structure of Glucose Isomerase Derivatized with Kr.

All present enzymatic activity of Structure of Glucose Isomerase Derivatized with Kr.:
5.3.1.5;

Protein crystallography data

The structure of Structure of Glucose Isomerase Derivatized with Kr., PDB code: 1o1h was solved by E.Nowak, S.Panjikar, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.334, 93.070, 98.795, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 16.1

Other elements in 1o1h:

The structure of Structure of Glucose Isomerase Derivatized with Kr. also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 4 atoms
Calcium (Ca) 2 atoms

Krypton Binding Sites:

The binding sites of Krypton atom in the Structure of Glucose Isomerase Derivatized with Kr. (pdb code 1o1h). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 4 binding sites of Krypton where determined in the Structure of Glucose Isomerase Derivatized with Kr., PDB code: 1o1h:
Jump to Krypton binding site number: 1; 2; 3; 4;

Krypton binding site 1 out of 4 in 1o1h

Go back to Krypton Binding Sites List in 1o1h
Krypton binding site 1 out of 4 in the Structure of Glucose Isomerase Derivatized with Kr.


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Structure of Glucose Isomerase Derivatized with Kr. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr1006

b:10.2
occ:0.20
CD1 A:LEU164 3.4 11.8 1.0
O A:HOH1048 3.5 8.7 1.0
CB A:ALA135 3.5 8.7 1.0
CG2 A:THR118 3.8 6.8 1.0
CD2 A:TYR133 3.8 5.4 1.0
CE2 A:TYR133 3.9 5.7 1.0
CE1 A:PHE161 4.0 8.2 1.0
CD2 A:PHE177 4.0 7.1 1.0
CE2 A:PHE177 4.1 8.8 1.0
CZ A:PHE103 4.2 8.2 1.0
CE2 A:PHE103 4.3 8.9 1.0
O A:VAL134 4.3 6.3 1.0
CA A:ALA135 4.3 6.0 1.0
N A:ALA135 4.6 6.3 1.0
C A:VAL134 4.6 5.6 1.0
CD1 A:PHE161 4.7 8.2 1.0
CZ A:PHE161 4.8 7.3 1.0
CG A:LEU164 4.8 8.6 1.0
OG1 A:THR90 4.9 6.9 1.0
O A:HOH1053 4.9 8.0 1.0

Krypton binding site 2 out of 4 in 1o1h

Go back to Krypton Binding Sites List in 1o1h
Krypton binding site 2 out of 4 in the Structure of Glucose Isomerase Derivatized with Kr.


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Structure of Glucose Isomerase Derivatized with Kr. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr1008

b:12.1
occ:0.40
NH2 A:ARG204 3.0 16.4 1.0
NE2 B:GLN233 3.1 6.2 1.0
NE A:ARG204 3.3 16.9 1.0
CZ A:ARG204 3.6 19.6 1.0
CG B:GLN233 3.6 5.1 1.0
CB A:ALA200 3.7 5.8 1.0
C A:ALA200 3.7 5.8 1.0
CB B:ALA237 3.7 9.0 1.0
O A:ALA200 3.7 6.8 1.0
N A:PHE201 3.8 5.5 1.0
CZ3 B:TRP236 3.8 8.6 1.0
CD B:GLN233 3.9 5.0 1.0
CE3 B:TRP236 3.9 6.9 1.0
CA A:PHE201 4.0 5.8 1.0
CD1 B:LEU199 4.1 7.0 1.0
O B:GLN233 4.3 5.3 1.0
CA A:ALA200 4.3 5.9 1.0
CD A:ARG204 4.6 18.0 1.0
CA B:ALA237 4.7 7.9 1.0
CB B:LEU199 4.8 6.0 1.0
CB A:PHE201 4.9 5.6 1.0
CG A:ARG204 4.9 21.6 1.0
NH1 A:ARG204 5.0 18.6 1.0
CG B:LEU199 5.0 5.5 1.0

Krypton binding site 3 out of 4 in 1o1h

Go back to Krypton Binding Sites List in 1o1h
Krypton binding site 3 out of 4 in the Structure of Glucose Isomerase Derivatized with Kr.


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Structure of Glucose Isomerase Derivatized with Kr. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr1005

b:11.9
occ:0.15
CD1 B:LEU164 3.3 10.3 1.0
O B:HOH1041 3.5 8.1 1.0
CB B:ALA135 3.5 8.3 1.0
CG2 B:THR118 3.7 8.2 1.0
CD2 B:TYR133 3.8 5.8 1.0
CE2 B:TYR133 4.0 6.5 1.0
CE1 B:PHE161 4.0 8.6 1.0
CD2 B:PHE177 4.0 7.1 1.0
CE2 B:PHE177 4.1 8.7 1.0
CZ B:PHE103 4.3 9.4 1.0
O B:VAL134 4.3 6.0 1.0
CA B:ALA135 4.4 6.1 1.0
CE2 B:PHE103 4.4 11.2 1.0
N B:ALA135 4.7 5.8 1.0
C B:VAL134 4.7 5.9 1.0
CD1 B:PHE161 4.7 8.4 1.0
CZ B:PHE161 4.8 7.5 1.0
CG B:LEU164 4.8 8.6 1.0
CB B:THR118 5.0 7.1 1.0
OG1 B:THR118 5.0 8.4 1.0
O B:HOH1048 5.0 8.4 1.0
OG1 B:THR90 5.0 6.9 1.0

Krypton binding site 4 out of 4 in 1o1h

Go back to Krypton Binding Sites List in 1o1h
Krypton binding site 4 out of 4 in the Structure of Glucose Isomerase Derivatized with Kr.


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Structure of Glucose Isomerase Derivatized with Kr. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr1007

b:11.9
occ:0.40
NE2 A:GLN233 3.1 6.0 1.0
NE B:ARG204 3.2 17.0 1.0
NH2 B:ARG204 3.3 17.4 1.0
CG A:GLN233 3.7 5.8 1.0
CB B:ALA200 3.7 6.5 1.0
C B:ALA200 3.7 5.9 1.0
CZ B:ARG204 3.7 18.2 1.0
CB A:ALA237 3.7 9.2 1.0
O B:ALA200 3.8 6.8 1.0
CZ3 A:TRP236 3.8 8.6 1.0
N B:PHE201 3.8 5.8 1.0
CE3 A:TRP236 3.9 7.8 1.0
CD A:GLN233 3.9 5.6 1.0
CA B:PHE201 4.1 6.0 1.0
CD1 A:LEU199 4.1 7.7 1.0
CG B:ARG204 4.2 16.9 1.0
CD B:ARG204 4.3 16.2 1.0
CA B:ALA200 4.3 6.0 1.0
O A:GLN233 4.3 6.6 1.0
CA A:ALA237 4.8 8.0 1.0
CB A:LEU199 4.9 5.5 1.0
CB B:PHE201 4.9 6.8 1.0

Reference:

E.Nowak, S.Panjikar, P.A.Tucker. Structure of Glucose Isomerase Derivatized with Kr. To Be Published.
Page generated: Mon Dec 14 02:51:08 2020

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