Krypton in PDB 5nw6: Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure

The structure of Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure, PDB code: 5nw6 was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	89.126, 89.126, 115.265, 90.00, 90.00, 120.00
R / Rfree (%)	15.5 / 18.1

The structure of Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Krypton atom in the Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure (pdb code 5nw6). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 3 binding sites of Krypton where determined in the Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure, PDB code: 5nw6:
Jump to Krypton binding site number: 1; 2; 3;

Krypton binding site 1 out of 3 in the Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr204 b:24.1 occ:0.30 O A:HOH360 1.7 33.1 1.0 OG A:SER55 3.4 16.9 1.0 CD2 A:LEU56 3.5 27.2 1.0 N A:ALA29 3.7 13.0 1.0 CD2 A:PHE32 3.7 16.5 1.0 CG A:LEU56 3.8 23.6 1.0 CA A:ALA29 3.8 13.5 1.0 C A:PHE28 3.8 13.1 1.0 CE2 A:PHE32 3.9 17.4 1.0 O A:PHE28 3.9 14.9 1.0 O A:PRO52 4.1 18.0 1.0 CB A:PHE28 4.1 15.4 1.0 CD1 A:LEU56 4.2 26.7 1.0 CE2 A:PHE61 4.2 16.4 1.0 CB A:ALA29 4.3 14.9 1.0 CZ A:PHE61 4.4 16.9 1.0 O A:HOH374 4.5 41.7 1.0 CA A:PHE28 4.6 14.2 1.0 O A:THR25 4.7 17.0 1.0 CB A:SER55 4.8 16.7 1.0 C A:PRO52 4.9 17.0 1.0 CG A:PHE32 4.9 15.8 1.0

Krypton binding site 2 out of 3 in the Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr205 b:38.1 occ:0.60 CG A:LEU136 4.0 29.7 1.0 CA A:TYR137 4.0 23.2 1.0 CZ3 A:TRP133 4.1 24.1 1.0 CD2 A:LEU136 4.1 31.7 1.0 CD1 A:TYR137 4.1 24.3 1.0 CG2 A:VAL140 4.1 28.4 1.0 CG2 A:ILE72 4.1 24.6 1.0 N A:TYR137 4.2 25.1 1.0 CB A:TYR137 4.3 23.4 1.0 CD2 A:LEU113 4.3 25.3 1.0 CG1 A:ILE72 4.4 24.5 1.0 CE3 A:TRP133 4.4 24.1 1.0 C A:LEU136 4.5 26.1 1.0 O A:LEU136 4.6 23.6 1.0 CB A:ALA75 4.6 26.8 1.0 CB A:ILE72 4.7 23.3 1.0 CG A:TYR137 4.7 22.4 1.0 CB A:VAL140 4.8 25.9 1.0 CB A:LEU136 4.8 27.5 1.0 CA A:ILE72 4.9 22.1 1.0 CD1 A:LEU136 5.0 31.5 1.0

Krypton binding site 3 out of 3 in the Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Crystal Structure of Murine Neuroglobin Under 50 Bar Krypton Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr206 b:28.1 occ:0.20 CD1 A:ILE72 3.5 29.0 1.0 CG1 A:VAL109 3.6 22.2 1.0 CMC A:HEM201 4.0 24.3 1.0 CD1 A:LEU27 4.1 24.6 1.0 CE1 A:TYR137 4.1 23.3 1.0 CG1 A:VAL68 4.1 19.1 1.0 CG1 A:ILE72 4.2 24.5 1.0 CD2 A:LEU113 4.3 25.3 1.0 CB A:LEU113 4.5 18.3 1.0 CBC A:HEM201 4.5 30.2 1.0 CD1 A:LEU113 4.6 23.5 1.0 CD1 A:TYR137 4.6 24.3 1.0 CG A:LEU113 4.8 21.3 1.0 O A:VAL109 4.9 16.9 1.0

N.Colloc'h, P.Carpentier, L.C.Montemiglio, B.Vallone, T.Prange. Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas Under Pressure. Biophys. J. V. 113 2199 2017.
ISSN: ESSN 1542-0086
PubMed: 29108649
DOI: 10.1016/J.BPJ.2017.10.014