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Krypton in PDB 6z7r: Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1

Enzymatic activity of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1

All present enzymatic activity of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1:
1.12.7.2;

Protein crystallography data

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r was solved by S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.05 / 1.77
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.125, 93.686, 98.433, 90.00, 93.26, 90.00
R / Rfree (%) 18.8 / 24.2

Other elements in 6z7r:

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Iron (Fe) 36 atoms
Chlorine (Cl) 2 atoms

Krypton Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Krypton atom in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 (pdb code 6z7r). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 42 binding sites of Krypton where determined in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r:
Jump to Krypton binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Krypton binding site 1 out of 42 in 6z7r

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Krypton binding site 1 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr305

b:34.9
occ:0.85
HA A:ALA34 3.0 35.1 1.0
HZ B:PHE139 3.0 23.7 1.0
HD11 A:LEU38 3.3 34.2 1.0
HB1 A:ALA34 3.4 19.4 1.0
HB2 A:LEU37 3.5 25.0 1.0
HG A:LEU38 3.6 37.6 1.0
HD12 A:LEU37 3.6 22.9 1.0
HE2 B:PHE139 3.6 33.1 1.0
HE1 B:TYR162 3.6 31.0 1.0
HB2 A:ALA34 3.6 19.4 1.0
HD11 B:LEU166 3.7 16.3 1.0
CA A:ALA34 3.7 29.1 1.0
CB A:ALA34 3.8 16.0 1.0
CZ B:PHE139 3.8 19.6 1.0
HD21 A:LEU38 3.9 34.9 1.0
CD1 A:LEU38 4.0 28.4 1.0
KR B:KR509 4.0 36.5 0.6
CE2 B:PHE139 4.1 27.5 1.0
HG12 B:ILE163 4.1 35.6 1.0
HD12 A:LEU38 4.1 34.2 1.0
CG A:LEU38 4.2 31.2 1.0
O A:ALA34 4.3 26.0 1.0
CB A:LEU37 4.3 20.7 1.0
CD1 B:LEU166 4.4 13.5 1.0
HD12 B:LEU166 4.4 16.3 1.0
CD1 A:LEU37 4.5 18.9 1.0
CE1 B:TYR162 4.5 25.7 1.0
CD2 A:LEU38 4.5 29.0 1.0
HB3 A:LEU37 4.5 25.0 1.0
HD13 B:LEU166 4.5 16.3 1.0
C A:ALA34 4.5 26.2 1.0
HD13 A:LEU37 4.7 22.9 1.0
HB3 A:ALA34 4.7 19.4 1.0
HD1 B:TYR162 4.8 28.4 1.0
N A:ALA34 4.8 22.0 1.0
HD23 A:LEU38 4.8 34.9 1.0
HD13 A:LEU38 4.8 34.2 1.0
CG A:LEU37 4.9 27.3 1.0
HG A:LEU37 4.9 32.9 1.0
CG1 B:ILE163 5.0 29.5 1.0

Krypton binding site 2 out of 42 in 6z7r

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Krypton binding site 2 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr306

b:23.5
occ:0.60
HG22 A:VAL170 2.9 49.6 1.0
HG21 A:VAL10 3.0 24.8 1.0
HG21 A:VAL170 3.0 49.6 1.0
HD12 A:LEU116 3.1 35.3 1.0
HG22 A:VAL10 3.2 24.8 1.0
CG2 A:VAL170 3.4 41.2 1.0
HG11 A:VAL10 3.5 26.6 1.0
HD11 A:LEU116 3.5 35.3 1.0
CG2 A:VAL10 3.5 20.5 1.0
HB3 A:PHE73 3.6 24.5 1.0
HB2 A:PHE73 3.6 24.5 1.0
CD1 A:LEU116 3.7 29.3 1.0
KR A:KR309 3.8 51.5 0.5
HG23 A:VAL75 3.8 20.9 1.0
HG22 A:VAL75 3.8 20.9 1.0
HG13 A:VAL10 3.8 26.6 1.0
HG23 A:VAL170 3.9 49.6 1.0
HG21 A:ILE41 3.9 25.5 1.0
HG21 A:VAL75 4.0 20.9 1.0
CG1 A:VAL10 4.0 22.0 1.0
CB A:PHE73 4.0 20.3 1.0
CG2 A:VAL75 4.0 17.3 1.0
KR A:KR307 4.1 30.8 0.8
HG11 A:VAL170 4.3 33.4 1.0
HG23 A:VAL10 4.3 24.8 1.0
HG13 A:VAL170 4.3 33.4 1.0
HD13 A:LEU116 4.4 35.3 1.0
CB A:VAL10 4.4 21.6 1.0
CG A:PHE73 4.5 30.2 1.0
HG22 A:ILE41 4.6 25.5 1.0
CG1 A:VAL170 4.6 27.7 1.0
HG A:LEU116 4.6 29.7 1.0
CB A:VAL170 4.7 26.5 1.0
CG2 A:ILE41 4.7 21.1 1.0
HD2 A:PHE73 4.8 34.6 1.0
CG A:LEU116 4.8 24.6 1.0
CD2 A:PHE73 4.9 28.7 1.0
HG12 A:VAL10 4.9 26.6 1.0
HB A:VAL10 4.9 26.1 1.0
HD13 A:ILE41 5.0 22.8 1.0

Krypton binding site 3 out of 42 in 6z7r

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Krypton binding site 3 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr307

b:30.8
occ:0.80
HD21 A:LEU174 3.2 33.6 1.0
HG22 A:VAL170 3.2 49.6 1.0
HB3 A:ALA173 3.2 41.7 1.0
HD23 A:LEU174 3.3 33.6 1.0
HA A:VAL170 3.4 39.4 1.0
HD11 A:LEU116 3.5 35.3 1.0
HG13 A:VAL170 3.5 33.4 1.0
HG A:LEU174 3.6 31.9 1.0
CE1 A:PHE73 3.6 30.6 1.0
CD2 A:LEU174 3.6 27.8 1.0
CD1 A:PHE73 3.7 21.7 1.0
CZ A:PHE73 3.8 24.8 1.0
HE1 A:PHE73 3.9 36.8 1.0
HB1 A:ALA173 3.9 41.7 1.0
KR A:KR311 3.9 32.4 0.7
CG A:PHE73 4.0 30.2 1.0
HD1 A:PHE73 4.0 26.2 1.0
CB A:ALA173 4.0 34.6 1.0
KR A:KR306 4.1 23.5 0.6
CG2 A:VAL170 4.1 41.2 1.0
CE2 A:PHE73 4.1 26.9 1.0
CG A:LEU174 4.2 26.5 1.0
O A:VAL170 4.2 28.9 1.0
CD2 A:PHE73 4.2 28.7 1.0
HZ A:PHE73 4.2 29.9 1.0
CA A:VAL170 4.3 32.7 1.0
CG1 A:VAL170 4.4 27.7 1.0
CD1 A:LEU116 4.4 29.3 1.0
HB2 A:ALA173 4.5 41.7 1.0
HD21 A:LEU116 4.5 49.9 1.0
CB A:VAL170 4.5 26.5 1.0
HB3 A:PHE73 4.5 24.5 1.0
HD22 A:LEU174 4.5 33.6 1.0
HD11 A:LEU174 4.5 32.1 1.0
HG23 A:VAL170 4.6 49.6 1.0
H A:LEU174 4.6 31.0 1.0
HG21 A:VAL170 4.6 49.6 1.0
HE2 A:PHE73 4.6 32.5 1.0
HD12 A:LEU116 4.7 35.3 1.0
C A:VAL170 4.7 22.7 1.0
HD2 A:PHE73 4.7 34.6 1.0
CB A:PHE73 4.8 20.3 1.0
HG A:LEU116 4.8 29.7 1.0
HG11 A:VAL170 4.8 33.4 1.0
N A:LEU174 4.8 25.7 1.0
HD12 A:ILE177 4.9 42.1 1.0
CD1 A:LEU174 5.0 26.6 1.0
HD13 A:LEU116 5.0 35.3 1.0
HB2 A:PHE73 5.0 24.5 1.0

Krypton binding site 4 out of 42 in 6z7r

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Krypton binding site 4 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr308

b:30.7
occ:0.62
KR A:KR309 2.4 51.5 0.5
HG11 A:VAL36 2.9 35.3 1.0
HD11 A:LEU25 3.3 27.8 1.0
HG21 A:VAL170 3.3 49.6 1.0
HG22 A:ILE166 3.4 19.0 1.0
HD21 A:LEU25 3.4 22.0 1.0
HD13 A:ILE41 3.5 22.8 1.0
HG13 A:VAL36 3.6 35.3 1.0
HA A:VAL167 3.6 29.9 1.0
CG1 A:VAL36 3.6 29.3 1.0
HG22 A:VAL167 3.7 29.8 1.0
HG12 A:VAL36 3.9 35.3 1.0
HG11 A:VAL170 4.0 33.4 1.0
HB A:VAL170 4.0 31.9 1.0
HD13 A:LEU25 4.0 27.8 1.0
CD1 A:LEU25 4.1 23.1 1.0
CG2 A:VAL170 4.1 41.2 1.0
HD22 A:LEU25 4.1 22.0 1.0
CD2 A:LEU25 4.2 18.2 1.0
HG21 A:ILE41 4.2 25.5 1.0
CG2 A:ILE166 4.2 15.7 1.0
HG21 A:ILE166 4.3 19.0 1.0
HG23 A:VAL170 4.3 49.6 1.0
CB A:VAL170 4.4 26.5 1.0
CD1 A:ILE41 4.5 18.8 1.0
HZ3 A:TRP12 4.5 24.8 1.0
CA A:VAL167 4.5 24.8 1.0
CG2 A:VAL167 4.5 24.7 1.0
HG23 A:VAL167 4.6 29.8 1.0
HG23 A:ILE166 4.6 19.0 1.0
HG21 A:VAL36 4.7 29.6 1.0
CG1 A:VAL170 4.7 27.7 1.0
HD11 A:ILE41 4.7 22.8 1.0
HG23 A:ILE41 4.7 25.5 1.0
CG A:LEU25 4.7 20.5 1.0
HD12 A:LEU25 4.8 27.8 1.0
N A:VAL167 4.8 21.4 1.0
HG13 A:VAL167 4.8 25.4 1.0
O A:ILE166 4.8 26.3 1.0
HG22 A:VAL170 4.9 49.6 1.0
HD12 A:ILE41 4.9 22.8 1.0
C A:ILE166 4.9 23.6 1.0
CG2 A:ILE41 4.9 21.1 1.0
HD23 A:LEU25 5.0 22.0 1.0
CB A:VAL36 5.0 19.8 1.0

Krypton binding site 5 out of 42 in 6z7r

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Krypton binding site 5 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 5 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr309

b:51.5
occ:0.47
KR A:KR308 2.4 30.7 0.6
HZ3 A:TRP12 2.9 24.8 1.0
HG21 A:VAL170 3.2 49.6 1.0
HG21 A:VAL75 3.4 20.9 1.0
HD13 A:ILE41 3.6 22.8 1.0
KR A:KR306 3.8 23.5 0.6
CZ3 A:TRP12 3.8 20.5 1.0
HD21 A:LEU25 3.8 22.0 1.0
HG22 A:ILE166 3.9 19.0 1.0
HD22 A:LEU25 4.0 22.0 1.0
HE3 A:TRP12 4.0 17.2 1.0
HG11 A:VAL10 4.1 26.6 1.0
CG2 A:VAL170 4.1 41.2 1.0
HD12 A:ILE41 4.2 22.8 1.0
HG21 A:ILE166 4.2 19.0 1.0
HG23 A:VAL170 4.2 49.6 1.0
HG21 A:ILE41 4.3 25.5 1.0
CG2 A:VAL75 4.3 17.3 1.0
CD1 A:ILE41 4.3 18.8 1.0
CE3 A:TRP12 4.3 14.2 1.0
CG2 A:ILE166 4.3 15.7 1.0
HG22 A:VAL75 4.3 20.9 1.0
HG23 A:ILE166 4.3 19.0 1.0
CD2 A:LEU25 4.3 18.2 1.0
HD11 A:ILE41 4.6 22.8 1.0
HG22 A:VAL170 4.6 49.6 1.0
HG23 A:VAL75 4.6 20.9 1.0
HG21 A:VAL10 4.7 24.8 1.0
HD11 A:LEU25 4.7 27.8 1.0
HD12 A:LEU116 4.7 35.3 1.0
HG11 A:VAL75 4.8 25.8 1.0
HG11 A:VAL36 4.8 35.3 1.0
HG11 A:VAL170 4.8 33.4 1.0
CH2 A:TRP12 4.8 21.5 1.0
HD13 A:LEU25 4.9 27.8 1.0
HH2 A:TRP12 4.9 26.0 1.0
HD23 A:LEU25 4.9 22.0 1.0

Krypton binding site 6 out of 42 in 6z7r

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Krypton binding site 6 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 6 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr310

b:40.8
occ:1.00
HD23 A:LEU25 3.2 22.0 1.0
HD21 A:LEU26 3.4 26.2 1.0
HD23 A:LEU26 3.6 26.2 1.0
HE2 A:HIS46 3.6 16.3 1.0
HD11 A:ILE33 3.7 39.5 1.0
HB3 A:SER22 3.7 22.4 1.0
NE2 A:HIS46 3.7 13.4 1.0
HD2 A:HIS46 3.8 23.9 1.0
HG21 A:VAL49 3.9 25.4 1.0
CD2 A:HIS46 3.9 19.8 1.0
CD2 A:LEU26 4.0 21.7 1.0
HG11 A:VAL49 4.0 18.0 1.0
HD22 A:LEU43 4.1 26.4 1.0
HB3 A:LEU25 4.2 31.7 1.0
CD2 A:LEU25 4.2 18.2 1.0
HA A:SER22 4.2 17.4 1.0
O A:SER22 4.3 19.8 1.0
HD21 A:LEU43 4.4 26.4 1.0
HG A:LEU26 4.4 31.7 1.0
HD13 A:ILE33 4.4 39.5 1.0
CD1 A:ILE33 4.4 32.8 1.0
CB A:SER22 4.4 18.6 1.0
CE1 A:HIS46 4.5 13.9 1.0
HG A:SER22 4.5 26.0 1.0
HG12 A:ILE33 4.5 33.2 1.0
HD11 A:LEU37 4.5 22.9 1.0
HD21 A:LEU25 4.5 22.0 1.0
HD21 A:LEU37 4.5 26.0 1.0
HG13 A:VAL49 4.5 18.0 1.0
HG22 A:VAL49 4.5 25.4 1.0
OG A:SER22 4.6 21.5 1.0
CG2 A:VAL49 4.7 21.1 1.0
CD2 A:LEU43 4.7 21.9 1.0
HG A:LEU25 4.7 24.8 1.0
CG1 A:VAL49 4.7 14.8 1.0
HD22 A:LEU26 4.7 26.2 1.0
HD22 A:LEU25 4.7 22.0 1.0
CA A:SER22 4.7 14.3 1.0
CG A:HIS46 4.7 15.6 1.0
CG A:LEU26 4.8 26.3 1.0
HE1 A:HIS46 4.9 16.9 1.0
CG A:LEU25 4.9 20.5 1.0
C A:SER22 4.9 8.8 1.0
HD23 A:LEU43 4.9 26.4 1.0
CB A:LEU25 5.0 26.3 1.0

Krypton binding site 7 out of 42 in 6z7r

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Krypton binding site 7 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 7 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr311

b:32.4
occ:0.71
HD21 A:LEU116 2.7 49.9 1.0
HG21 A:VAL154 3.2 45.4 1.0
HB3 A:ALA114 3.2 29.1 1.0
HB1 A:ALA173 3.2 41.7 1.0
HG11 A:VAL189 3.5 51.4 1.0
HB2 A:ALA173 3.5 41.7 1.0
CD2 A:LEU116 3.6 41.5 1.0
HB1 A:ALA114 3.6 29.1 1.0
HD23 A:LEU116 3.6 49.9 1.0
HD22 A:LEU186 3.7 48.8 1.0
CB A:ALA173 3.7 34.6 1.0
CB A:ALA114 3.7 24.1 1.0
HB3 A:ALA173 3.8 41.7 1.0
HB2 A:ALA114 3.9 29.1 1.0
HG23 A:VAL154 3.9 45.4 1.0
HE1 A:PHE73 3.9 36.8 1.0
KR A:KR307 3.9 30.8 0.8
HD21 A:LEU186 3.9 48.8 1.0
CG2 A:VAL154 4.0 37.7 1.0
HG21 A:VAL189 4.0 41.7 1.0
KR A:KR313 4.1 50.6 0.8
HD22 A:LEU116 4.2 49.9 1.0
HG A:LEU116 4.2 29.7 1.0
CD2 A:LEU186 4.2 40.5 1.0
HD11 A:LEU116 4.3 35.3 1.0
HD1 A:PHE73 4.3 26.2 1.0
CG A:LEU116 4.4 24.6 1.0
CG1 A:VAL189 4.4 42.7 1.0
CE1 A:PHE73 4.5 30.6 1.0
HD23 A:LEU186 4.5 48.8 1.0
HG22 A:VAL154 4.6 45.4 1.0
HB A:VAL154 4.6 22.3 1.0
CD1 A:PHE73 4.7 21.7 1.0
HG13 A:VAL189 4.8 51.4 1.0
CG2 A:VAL189 4.8 34.6 1.0
CD1 A:LEU116 4.9 29.3 1.0
HG11 A:VAL154 4.9 36.5 1.0
HG22 A:THR169 4.9 30.9 1.0
CB A:VAL154 4.9 18.5 1.0
HG12 A:VAL189 4.9 51.4 1.0
HD11 A:ILE177 4.9 42.1 1.0

Krypton binding site 8 out of 42 in 6z7r

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Krypton binding site 8 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 8 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr312

b:29.6
occ:0.67
HD11 A:LEU26 2.8 22.5 1.0
HG21 A:THR48 3.1 27.1 1.0
HB3 A:SER22 3.3 22.4 1.0
HG22 A:VAL23 3.4 19.0 1.0
HD12 A:LEU26 3.5 22.5 1.0
CD1 A:LEU26 3.6 18.7 1.0
HG22 A:THR48 3.6 27.1 1.0
HB2 A:SER22 3.7 22.4 1.0
HG22 A:THR19 3.7 28.0 1.0
CG2 A:THR48 3.8 22.4 1.0
HG23 A:VAL23 3.8 19.0 1.0
HD11 B:LEU120 3.8 22.5 1.0
HA A:VAL23 3.9 18.9 1.0
CB A:SER22 3.9 18.6 1.0
HG13 A:VAL49 4.0 18.0 1.0
HG A:LEU26 4.0 31.7 1.0
HB A:THR48 4.0 21.4 1.0
HD21 B:LEU120 4.0 14.3 1.0
HG21 A:THR19 4.0 28.0 1.0
CG2 A:VAL23 4.0 15.7 1.0
HD21 A:LEU26 4.1 26.2 1.0
CG2 A:THR19 4.2 23.2 1.0
N A:VAL23 4.2 16.0 1.0
HG23 A:THR19 4.2 28.0 1.0
CG A:LEU26 4.3 26.3 1.0
C A:SER22 4.3 8.8 1.0
HD13 A:LEU26 4.3 22.5 1.0
CB A:THR48 4.4 17.7 1.0
HG12 A:VAL49 4.4 18.0 1.0
HG11 A:VAL49 4.4 18.0 1.0
H A:VAL23 4.4 19.4 1.0
CG1 A:VAL49 4.5 14.8 1.0
CA A:VAL23 4.5 15.6 1.0
O A:SER22 4.5 19.8 1.0
HG23 A:THR48 4.5 27.1 1.0
HD21 B:LEU125 4.7 31.1 1.0
HG22 B:VAL77 4.7 19.3 1.0
CD1 B:LEU120 4.7 18.6 1.0
CD2 A:LEU26 4.7 21.7 1.0
HE1 A:HIS46 4.8 16.9 1.0
HG21 A:VAL23 4.8 19.0 1.0
CA A:SER22 4.8 14.3 1.0
CD2 B:LEU120 4.9 11.8 1.0
HD13 B:LEU120 4.9 22.5 1.0
CB A:VAL23 4.9 15.3 1.0
OG1 A:THR48 5.0 20.9 1.0

Krypton binding site 9 out of 42 in 6z7r

Go back to Krypton Binding Sites List in 6z7r
Krypton binding site 9 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 9 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr313

b:50.6
occ:0.77
HB2 A:PRO152 2.6 29.7 1.0
HG23 A:VAL154 2.8 45.4 1.0
HG22 A:VAL154 2.9 45.4 1.0
HG12 A:VAL189 3.0 51.4 1.0
HG11 A:VAL189 3.0 51.4 1.0
CG2 A:VAL154 3.1 37.7 1.0
HG21 A:VAL154 3.2 45.4 1.0
HG23 A:VAL190 3.3 42.6 1.0
HB1 A:ALA114 3.4 29.1 1.0
CG1 A:VAL189 3.5 42.7 1.0
CB A:PRO152 3.5 24.6 1.0
HD22 A:LEU186 3.6 48.8 1.0
HB2 A:ALA114 3.8 29.1 1.0
HG2 A:PRO152 3.8 31.4 1.0
HB3 A:PRO152 3.8 29.7 1.0
HG22 A:VAL190 4.0 42.6 1.0
CG2 A:VAL190 4.0 35.4 1.0
CB A:ALA114 4.0 24.1 1.0
HB A:VAL189 4.1 43.5 1.0
CG A:PRO152 4.1 26.1 1.0
HB3 A:LEU186 4.1 45.4 1.0
KR A:KR311 4.1 32.4 0.7
HG13 A:VAL189 4.2 51.4 1.0
HD13 A:LEU186 4.2 38.9 1.0
HG3 A:PRO152 4.3 31.4 1.0
C A:PRO152 4.3 28.5 1.0
HD11 A:LEU193 4.4 34.3 1.0
O A:LEU186 4.4 39.0 1.0
CB A:VAL189 4.4 36.1 1.0
HG21 A:VAL190 4.4 42.6 1.0
HA A:LEU186 4.5 46.3 1.0
HB3 A:ALA114 4.5 29.1 1.0
CA A:PRO152 4.5 24.3 1.0
N A:VAL153 4.5 29.6 1.0
CB A:VAL154 4.6 18.5 1.0
C A:VAL153 4.6 26.8 1.0
CD2 A:LEU186 4.6 40.5 1.0
O A:PRO152 4.6 29.1 1.0
N A:VAL154 4.7 21.3 1.0
O A:VAL153 4.7 31.1 1.0
H A:VAL190 4.7 38.5 1.0
H A:VAL153 4.8 35.7 1.0
CB A:LEU186 4.9 37.7 1.0
HA A:VAL190 4.9 44.2 1.0
N A:VAL190 4.9 31.9 1.0
H A:VAL154 4.9 25.7 1.0
HB A:VAL154 5.0 22.3 1.0
HA A:VAL153 5.0 29.9 1.0

Krypton binding site 10 out of 42 in 6z7r

Go back to Krypton Binding Sites List in 6z7r
Krypton binding site 10 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 10 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr314

b:53.6
occ:0.74
HD13 A:ILE58 2.9 23.7 1.0
HG13 A:ILE91 3.0 28.7 1.0
HD11 A:ILE91 3.0 24.1 1.0
HE1 A:MET61 3.1 24.3 1.0
HG23 A:ILE58 3.5 34.3 1.0
HD12 A:ILE91 3.6 24.1 1.0
CD1 A:ILE91 3.6 19.9 1.0
CD1 A:ILE58 3.7 19.6 1.0
CG1 A:ILE91 3.7 23.8 1.0
HG12 A:ILE58 3.7 27.7 1.0
HG21 A:ILE99 3.7 23.9 1.0
CE A:MET61 3.8 20.1 1.0
HD11 A:ILE58 3.8 23.7 1.0
HE2 A:MET61 3.9 24.3 1.0
HE3 A:MET61 3.9 24.3 1.0
HA3 A:GLY92 3.9 22.8 1.0
HD13 A:ILE99 4.0 26.6 1.0
HZ A:PHE45 4.0 20.0 1.0
HD22 A:LEU13 4.1 22.9 1.0
HG21 A:ILE58 4.1 34.3 1.0
HG12 A:ILE91 4.1 28.7 1.0
CG1 A:ILE58 4.2 22.9 1.0
CG2 A:ILE58 4.2 28.5 1.0
HB2 A:ALA104 4.3 26.3 1.0
HD12 A:ILE99 4.3 26.6 1.0
HE2 A:PHE108 4.4 20.8 1.0
CZ A:PHE45 4.4 16.5 1.0
HG22 A:ILE99 4.5 23.9 1.0
HD12 A:ILE58 4.5 23.7 1.0
CG2 A:ILE99 4.5 19.8 1.0
HB A:ILE99 4.5 24.4 1.0
HD13 A:ILE91 4.5 24.1 1.0
O A:ILE91 4.5 13.5 1.0
HB1 A:ALA104 4.6 26.3 1.0
CD1 A:ILE99 4.6 22.0 1.0
HD3 B:PRO23 4.7 29.6 1.0
C A:ILE91 4.7 25.3 1.0
CB A:ILE58 4.8 20.8 1.0
HE2 A:PHE45 4.8 15.9 1.0
HD21 A:LEU13 4.8 22.9 1.0
HD13 A:LEU13 4.8 22.2 1.0
CA A:GLY92 4.8 18.9 1.0
HB A:ILE91 4.8 22.0 1.0
CE2 A:PHE45 4.9 13.1 1.0
HA A:ILE58 4.9 25.6 1.0
CD2 A:LEU13 4.9 18.9 1.0
CB A:ILE91 4.9 18.2 1.0
CB A:ALA104 4.9 21.8 1.0
N A:GLY92 5.0 21.5 1.0
O A:HOH433 5.0 22.5 1.0
CB A:ILE99 5.0 20.2 1.0

Reference:

S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias. Exploring the Gas Access Routes in A [Nifese] Hydrogenase Using Crystals Pressurized with Krypton and Oxygen. J.Biol.Inorg.Chem. V. 25 863 2020.
ISSN: ESSN 1432-1327
PubMed: 32865640
DOI: 10.1007/S00775-020-01814-Y
Page generated: Mon Dec 14 02:56:55 2020

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