Krypton in PDB 6z7r: Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1

All present enzymatic activity of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1:
1.12.7.2;

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r was solved by S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.05 / 1.77
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	75.125, 93.686, 98.433, 90.00, 93.26, 90.00
R / Rfree (%)	18.8 / 24.2

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 also contains other interesting chemical elements:

Nickel	(Ni)	2 atoms
Iron	(Fe)	36 atoms
Chlorine	(Cl)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Krypton atom in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 (pdb code 6z7r). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 42 binding sites of Krypton where determined in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r:
Jump to Krypton binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Krypton binding site 1 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr305 b:34.9 occ:0.85 HA A:ALA34 3.0 35.1 1.0 HZ B:PHE139 3.0 23.7 1.0 HD11 A:LEU38 3.3 34.2 1.0 HB1 A:ALA34 3.4 19.4 1.0 HB2 A:LEU37 3.5 25.0 1.0 HG A:LEU38 3.6 37.6 1.0 HD12 A:LEU37 3.6 22.9 1.0 HE2 B:PHE139 3.6 33.1 1.0 HE1 B:TYR162 3.6 31.0 1.0 HB2 A:ALA34 3.6 19.4 1.0 HD11 B:LEU166 3.7 16.3 1.0 CA A:ALA34 3.7 29.1 1.0 CB A:ALA34 3.8 16.0 1.0 CZ B:PHE139 3.8 19.6 1.0 HD21 A:LEU38 3.9 34.9 1.0 CD1 A:LEU38 4.0 28.4 1.0 KR B:KR509 4.0 36.5 0.6 CE2 B:PHE139 4.1 27.5 1.0 HG12 B:ILE163 4.1 35.6 1.0 HD12 A:LEU38 4.1 34.2 1.0 CG A:LEU38 4.2 31.2 1.0 O A:ALA34 4.3 26.0 1.0 CB A:LEU37 4.3 20.7 1.0 CD1 B:LEU166 4.4 13.5 1.0 HD12 B:LEU166 4.4 16.3 1.0 CD1 A:LEU37 4.5 18.9 1.0 CE1 B:TYR162 4.5 25.7 1.0 CD2 A:LEU38 4.5 29.0 1.0 HB3 A:LEU37 4.5 25.0 1.0 HD13 B:LEU166 4.5 16.3 1.0 C A:ALA34 4.5 26.2 1.0 HD13 A:LEU37 4.7 22.9 1.0 HB3 A:ALA34 4.7 19.4 1.0 HD1 B:TYR162 4.8 28.4 1.0 N A:ALA34 4.8 22.0 1.0 HD23 A:LEU38 4.8 34.9 1.0 HD13 A:LEU38 4.8 34.2 1.0 CG A:LEU37 4.9 27.3 1.0 HG A:LEU37 4.9 32.9 1.0 CG1 B:ILE163 5.0 29.5 1.0

Krypton binding site 2 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr306 b:23.5 occ:0.60 HG22 A:VAL170 2.9 49.6 1.0 HG21 A:VAL10 3.0 24.8 1.0 HG21 A:VAL170 3.0 49.6 1.0 HD12 A:LEU116 3.1 35.3 1.0 HG22 A:VAL10 3.2 24.8 1.0 CG2 A:VAL170 3.4 41.2 1.0 HG11 A:VAL10 3.5 26.6 1.0 HD11 A:LEU116 3.5 35.3 1.0 CG2 A:VAL10 3.5 20.5 1.0 HB3 A:PHE73 3.6 24.5 1.0 HB2 A:PHE73 3.6 24.5 1.0 CD1 A:LEU116 3.7 29.3 1.0 KR A:KR309 3.8 51.5 0.5 HG23 A:VAL75 3.8 20.9 1.0 HG22 A:VAL75 3.8 20.9 1.0 HG13 A:VAL10 3.8 26.6 1.0 HG23 A:VAL170 3.9 49.6 1.0 HG21 A:ILE41 3.9 25.5 1.0 HG21 A:VAL75 4.0 20.9 1.0 CG1 A:VAL10 4.0 22.0 1.0 CB A:PHE73 4.0 20.3 1.0 CG2 A:VAL75 4.0 17.3 1.0 KR A:KR307 4.1 30.8 0.8 HG11 A:VAL170 4.3 33.4 1.0 HG23 A:VAL10 4.3 24.8 1.0 HG13 A:VAL170 4.3 33.4 1.0 HD13 A:LEU116 4.4 35.3 1.0 CB A:VAL10 4.4 21.6 1.0 CG A:PHE73 4.5 30.2 1.0 HG22 A:ILE41 4.6 25.5 1.0 CG1 A:VAL170 4.6 27.7 1.0 HG A:LEU116 4.6 29.7 1.0 CB A:VAL170 4.7 26.5 1.0 CG2 A:ILE41 4.7 21.1 1.0 HD2 A:PHE73 4.8 34.6 1.0 CG A:LEU116 4.8 24.6 1.0 CD2 A:PHE73 4.9 28.7 1.0 HG12 A:VAL10 4.9 26.6 1.0 HB A:VAL10 4.9 26.1 1.0 HD13 A:ILE41 5.0 22.8 1.0

Krypton binding site 3 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr307 b:30.8 occ:0.80 HD21 A:LEU174 3.2 33.6 1.0 HG22 A:VAL170 3.2 49.6 1.0 HB3 A:ALA173 3.2 41.7 1.0 HD23 A:LEU174 3.3 33.6 1.0 HA A:VAL170 3.4 39.4 1.0 HD11 A:LEU116 3.5 35.3 1.0 HG13 A:VAL170 3.5 33.4 1.0 HG A:LEU174 3.6 31.9 1.0 CE1 A:PHE73 3.6 30.6 1.0 CD2 A:LEU174 3.6 27.8 1.0 CD1 A:PHE73 3.7 21.7 1.0 CZ A:PHE73 3.8 24.8 1.0 HE1 A:PHE73 3.9 36.8 1.0 HB1 A:ALA173 3.9 41.7 1.0 KR A:KR311 3.9 32.4 0.7 CG A:PHE73 4.0 30.2 1.0 HD1 A:PHE73 4.0 26.2 1.0 CB A:ALA173 4.0 34.6 1.0 KR A:KR306 4.1 23.5 0.6 CG2 A:VAL170 4.1 41.2 1.0 CE2 A:PHE73 4.1 26.9 1.0 CG A:LEU174 4.2 26.5 1.0 O A:VAL170 4.2 28.9 1.0 CD2 A:PHE73 4.2 28.7 1.0 HZ A:PHE73 4.2 29.9 1.0 CA A:VAL170 4.3 32.7 1.0 CG1 A:VAL170 4.4 27.7 1.0 CD1 A:LEU116 4.4 29.3 1.0 HB2 A:ALA173 4.5 41.7 1.0 HD21 A:LEU116 4.5 49.9 1.0 CB A:VAL170 4.5 26.5 1.0 HB3 A:PHE73 4.5 24.5 1.0 HD22 A:LEU174 4.5 33.6 1.0 HD11 A:LEU174 4.5 32.1 1.0 HG23 A:VAL170 4.6 49.6 1.0 H A:LEU174 4.6 31.0 1.0 HG21 A:VAL170 4.6 49.6 1.0 HE2 A:PHE73 4.6 32.5 1.0 HD12 A:LEU116 4.7 35.3 1.0 C A:VAL170 4.7 22.7 1.0 HD2 A:PHE73 4.7 34.6 1.0 CB A:PHE73 4.8 20.3 1.0 HG A:LEU116 4.8 29.7 1.0 HG11 A:VAL170 4.8 33.4 1.0 N A:LEU174 4.8 25.7 1.0 HD12 A:ILE177 4.9 42.1 1.0 CD1 A:LEU174 5.0 26.6 1.0 HD13 A:LEU116 5.0 35.3 1.0 HB2 A:PHE73 5.0 24.5 1.0

Krypton binding site 4 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr308 b:30.7 occ:0.62 KR A:KR309 2.4 51.5 0.5 HG11 A:VAL36 2.9 35.3 1.0 HD11 A:LEU25 3.3 27.8 1.0 HG21 A:VAL170 3.3 49.6 1.0 HG22 A:ILE166 3.4 19.0 1.0 HD21 A:LEU25 3.4 22.0 1.0 HD13 A:ILE41 3.5 22.8 1.0 HG13 A:VAL36 3.6 35.3 1.0 HA A:VAL167 3.6 29.9 1.0 CG1 A:VAL36 3.6 29.3 1.0 HG22 A:VAL167 3.7 29.8 1.0 HG12 A:VAL36 3.9 35.3 1.0 HG11 A:VAL170 4.0 33.4 1.0 HB A:VAL170 4.0 31.9 1.0 HD13 A:LEU25 4.0 27.8 1.0 CD1 A:LEU25 4.1 23.1 1.0 CG2 A:VAL170 4.1 41.2 1.0 HD22 A:LEU25 4.1 22.0 1.0 CD2 A:LEU25 4.2 18.2 1.0 HG21 A:ILE41 4.2 25.5 1.0 CG2 A:ILE166 4.2 15.7 1.0 HG21 A:ILE166 4.3 19.0 1.0 HG23 A:VAL170 4.3 49.6 1.0 CB A:VAL170 4.4 26.5 1.0 CD1 A:ILE41 4.5 18.8 1.0 HZ3 A:TRP12 4.5 24.8 1.0 CA A:VAL167 4.5 24.8 1.0 CG2 A:VAL167 4.5 24.7 1.0 HG23 A:VAL167 4.6 29.8 1.0 HG23 A:ILE166 4.6 19.0 1.0 HG21 A:VAL36 4.7 29.6 1.0 CG1 A:VAL170 4.7 27.7 1.0 HD11 A:ILE41 4.7 22.8 1.0 HG23 A:ILE41 4.7 25.5 1.0 CG A:LEU25 4.7 20.5 1.0 HD12 A:LEU25 4.8 27.8 1.0 N A:VAL167 4.8 21.4 1.0 HG13 A:VAL167 4.8 25.4 1.0 O A:ILE166 4.8 26.3 1.0 HG22 A:VAL170 4.9 49.6 1.0 HD12 A:ILE41 4.9 22.8 1.0 C A:ILE166 4.9 23.6 1.0 CG2 A:ILE41 4.9 21.1 1.0 HD23 A:LEU25 5.0 22.0 1.0 CB A:VAL36 5.0 19.8 1.0

Krypton binding site 5 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 5 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr309 b:51.5 occ:0.47 KR A:KR308 2.4 30.7 0.6 HZ3 A:TRP12 2.9 24.8 1.0 HG21 A:VAL170 3.2 49.6 1.0 HG21 A:VAL75 3.4 20.9 1.0 HD13 A:ILE41 3.6 22.8 1.0 KR A:KR306 3.8 23.5 0.6 CZ3 A:TRP12 3.8 20.5 1.0 HD21 A:LEU25 3.8 22.0 1.0 HG22 A:ILE166 3.9 19.0 1.0 HD22 A:LEU25 4.0 22.0 1.0 HE3 A:TRP12 4.0 17.2 1.0 HG11 A:VAL10 4.1 26.6 1.0 CG2 A:VAL170 4.1 41.2 1.0 HD12 A:ILE41 4.2 22.8 1.0 HG21 A:ILE166 4.2 19.0 1.0 HG23 A:VAL170 4.2 49.6 1.0 HG21 A:ILE41 4.3 25.5 1.0 CG2 A:VAL75 4.3 17.3 1.0 CD1 A:ILE41 4.3 18.8 1.0 CE3 A:TRP12 4.3 14.2 1.0 CG2 A:ILE166 4.3 15.7 1.0 HG22 A:VAL75 4.3 20.9 1.0 HG23 A:ILE166 4.3 19.0 1.0 CD2 A:LEU25 4.3 18.2 1.0 HD11 A:ILE41 4.6 22.8 1.0 HG22 A:VAL170 4.6 49.6 1.0 HG23 A:VAL75 4.6 20.9 1.0 HG21 A:VAL10 4.7 24.8 1.0 HD11 A:LEU25 4.7 27.8 1.0 HD12 A:LEU116 4.7 35.3 1.0 HG11 A:VAL75 4.8 25.8 1.0 HG11 A:VAL36 4.8 35.3 1.0 HG11 A:VAL170 4.8 33.4 1.0 CH2 A:TRP12 4.8 21.5 1.0 HD13 A:LEU25 4.9 27.8 1.0 HH2 A:TRP12 4.9 26.0 1.0 HD23 A:LEU25 4.9 22.0 1.0

Krypton binding site 6 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 6 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr310 b:40.8 occ:1.00 HD23 A:LEU25 3.2 22.0 1.0 HD21 A:LEU26 3.4 26.2 1.0 HD23 A:LEU26 3.6 26.2 1.0 HE2 A:HIS46 3.6 16.3 1.0 HD11 A:ILE33 3.7 39.5 1.0 HB3 A:SER22 3.7 22.4 1.0 NE2 A:HIS46 3.7 13.4 1.0 HD2 A:HIS46 3.8 23.9 1.0 HG21 A:VAL49 3.9 25.4 1.0 CD2 A:HIS46 3.9 19.8 1.0 CD2 A:LEU26 4.0 21.7 1.0 HG11 A:VAL49 4.0 18.0 1.0 HD22 A:LEU43 4.1 26.4 1.0 HB3 A:LEU25 4.2 31.7 1.0 CD2 A:LEU25 4.2 18.2 1.0 HA A:SER22 4.2 17.4 1.0 O A:SER22 4.3 19.8 1.0 HD21 A:LEU43 4.4 26.4 1.0 HG A:LEU26 4.4 31.7 1.0 HD13 A:ILE33 4.4 39.5 1.0 CD1 A:ILE33 4.4 32.8 1.0 CB A:SER22 4.4 18.6 1.0 CE1 A:HIS46 4.5 13.9 1.0 HG A:SER22 4.5 26.0 1.0 HG12 A:ILE33 4.5 33.2 1.0 HD11 A:LEU37 4.5 22.9 1.0 HD21 A:LEU25 4.5 22.0 1.0 HD21 A:LEU37 4.5 26.0 1.0 HG13 A:VAL49 4.5 18.0 1.0 HG22 A:VAL49 4.5 25.4 1.0 OG A:SER22 4.6 21.5 1.0 CG2 A:VAL49 4.7 21.1 1.0 CD2 A:LEU43 4.7 21.9 1.0 HG A:LEU25 4.7 24.8 1.0 CG1 A:VAL49 4.7 14.8 1.0 HD22 A:LEU26 4.7 26.2 1.0 HD22 A:LEU25 4.7 22.0 1.0 CA A:SER22 4.7 14.3 1.0 CG A:HIS46 4.7 15.6 1.0 CG A:LEU26 4.8 26.3 1.0 HE1 A:HIS46 4.9 16.9 1.0 CG A:LEU25 4.9 20.5 1.0 C A:SER22 4.9 8.8 1.0 HD23 A:LEU43 4.9 26.4 1.0 CB A:LEU25 5.0 26.3 1.0

Krypton binding site 7 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 7 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr311 b:32.4 occ:0.71 HD21 A:LEU116 2.7 49.9 1.0 HG21 A:VAL154 3.2 45.4 1.0 HB3 A:ALA114 3.2 29.1 1.0 HB1 A:ALA173 3.2 41.7 1.0 HG11 A:VAL189 3.5 51.4 1.0 HB2 A:ALA173 3.5 41.7 1.0 CD2 A:LEU116 3.6 41.5 1.0 HB1 A:ALA114 3.6 29.1 1.0 HD23 A:LEU116 3.6 49.9 1.0 HD22 A:LEU186 3.7 48.8 1.0 CB A:ALA173 3.7 34.6 1.0 CB A:ALA114 3.7 24.1 1.0 HB3 A:ALA173 3.8 41.7 1.0 HB2 A:ALA114 3.9 29.1 1.0 HG23 A:VAL154 3.9 45.4 1.0 HE1 A:PHE73 3.9 36.8 1.0 KR A:KR307 3.9 30.8 0.8 HD21 A:LEU186 3.9 48.8 1.0 CG2 A:VAL154 4.0 37.7 1.0 HG21 A:VAL189 4.0 41.7 1.0 KR A:KR313 4.1 50.6 0.8 HD22 A:LEU116 4.2 49.9 1.0 HG A:LEU116 4.2 29.7 1.0 CD2 A:LEU186 4.2 40.5 1.0 HD11 A:LEU116 4.3 35.3 1.0 HD1 A:PHE73 4.3 26.2 1.0 CG A:LEU116 4.4 24.6 1.0 CG1 A:VAL189 4.4 42.7 1.0 CE1 A:PHE73 4.5 30.6 1.0 HD23 A:LEU186 4.5 48.8 1.0 HG22 A:VAL154 4.6 45.4 1.0 HB A:VAL154 4.6 22.3 1.0 CD1 A:PHE73 4.7 21.7 1.0 HG13 A:VAL189 4.8 51.4 1.0 CG2 A:VAL189 4.8 34.6 1.0 CD1 A:LEU116 4.9 29.3 1.0 HG11 A:VAL154 4.9 36.5 1.0 HG22 A:THR169 4.9 30.9 1.0 CB A:VAL154 4.9 18.5 1.0 HG12 A:VAL189 4.9 51.4 1.0 HD11 A:ILE177 4.9 42.1 1.0

Krypton binding site 8 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 8 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr312 b:29.6 occ:0.67 HD11 A:LEU26 2.8 22.5 1.0 HG21 A:THR48 3.1 27.1 1.0 HB3 A:SER22 3.3 22.4 1.0 HG22 A:VAL23 3.4 19.0 1.0 HD12 A:LEU26 3.5 22.5 1.0 CD1 A:LEU26 3.6 18.7 1.0 HG22 A:THR48 3.6 27.1 1.0 HB2 A:SER22 3.7 22.4 1.0 HG22 A:THR19 3.7 28.0 1.0 CG2 A:THR48 3.8 22.4 1.0 HG23 A:VAL23 3.8 19.0 1.0 HD11 B:LEU120 3.8 22.5 1.0 HA A:VAL23 3.9 18.9 1.0 CB A:SER22 3.9 18.6 1.0 HG13 A:VAL49 4.0 18.0 1.0 HG A:LEU26 4.0 31.7 1.0 HB A:THR48 4.0 21.4 1.0 HD21 B:LEU120 4.0 14.3 1.0 HG21 A:THR19 4.0 28.0 1.0 CG2 A:VAL23 4.0 15.7 1.0 HD21 A:LEU26 4.1 26.2 1.0 CG2 A:THR19 4.2 23.2 1.0 N A:VAL23 4.2 16.0 1.0 HG23 A:THR19 4.2 28.0 1.0 CG A:LEU26 4.3 26.3 1.0 C A:SER22 4.3 8.8 1.0 HD13 A:LEU26 4.3 22.5 1.0 CB A:THR48 4.4 17.7 1.0 HG12 A:VAL49 4.4 18.0 1.0 HG11 A:VAL49 4.4 18.0 1.0 H A:VAL23 4.4 19.4 1.0 CG1 A:VAL49 4.5 14.8 1.0 CA A:VAL23 4.5 15.6 1.0 O A:SER22 4.5 19.8 1.0 HG23 A:THR48 4.5 27.1 1.0 HD21 B:LEU125 4.7 31.1 1.0 HG22 B:VAL77 4.7 19.3 1.0 CD1 B:LEU120 4.7 18.6 1.0 CD2 A:LEU26 4.7 21.7 1.0 HE1 A:HIS46 4.8 16.9 1.0 HG21 A:VAL23 4.8 19.0 1.0 CA A:SER22 4.8 14.3 1.0 CD2 B:LEU120 4.9 11.8 1.0 HD13 B:LEU120 4.9 22.5 1.0 CB A:VAL23 4.9 15.3 1.0 OG1 A:THR48 5.0 20.9 1.0

Krypton binding site 9 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 9 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr313 b:50.6 occ:0.77 HB2 A:PRO152 2.6 29.7 1.0 HG23 A:VAL154 2.8 45.4 1.0 HG22 A:VAL154 2.9 45.4 1.0 HG12 A:VAL189 3.0 51.4 1.0 HG11 A:VAL189 3.0 51.4 1.0 CG2 A:VAL154 3.1 37.7 1.0 HG21 A:VAL154 3.2 45.4 1.0 HG23 A:VAL190 3.3 42.6 1.0 HB1 A:ALA114 3.4 29.1 1.0 CG1 A:VAL189 3.5 42.7 1.0 CB A:PRO152 3.5 24.6 1.0 HD22 A:LEU186 3.6 48.8 1.0 HB2 A:ALA114 3.8 29.1 1.0 HG2 A:PRO152 3.8 31.4 1.0 HB3 A:PRO152 3.8 29.7 1.0 HG22 A:VAL190 4.0 42.6 1.0 CG2 A:VAL190 4.0 35.4 1.0 CB A:ALA114 4.0 24.1 1.0 HB A:VAL189 4.1 43.5 1.0 CG A:PRO152 4.1 26.1 1.0 HB3 A:LEU186 4.1 45.4 1.0 KR A:KR311 4.1 32.4 0.7 HG13 A:VAL189 4.2 51.4 1.0 HD13 A:LEU186 4.2 38.9 1.0 HG3 A:PRO152 4.3 31.4 1.0 C A:PRO152 4.3 28.5 1.0 HD11 A:LEU193 4.4 34.3 1.0 O A:LEU186 4.4 39.0 1.0 CB A:VAL189 4.4 36.1 1.0 HG21 A:VAL190 4.4 42.6 1.0 HA A:LEU186 4.5 46.3 1.0 HB3 A:ALA114 4.5 29.1 1.0 CA A:PRO152 4.5 24.3 1.0 N A:VAL153 4.5 29.6 1.0 CB A:VAL154 4.6 18.5 1.0 C A:VAL153 4.6 26.8 1.0 CD2 A:LEU186 4.6 40.5 1.0 O A:PRO152 4.6 29.1 1.0 N A:VAL154 4.7 21.3 1.0 O A:VAL153 4.7 31.1 1.0 H A:VAL190 4.7 38.5 1.0 H A:VAL153 4.8 35.7 1.0 CB A:LEU186 4.9 37.7 1.0 HA A:VAL190 4.9 44.2 1.0 N A:VAL190 4.9 31.9 1.0 H A:VAL154 4.9 25.7 1.0 HB A:VAL154 5.0 22.3 1.0 HA A:VAL153 5.0 29.9 1.0

Krypton binding site 10 out of 42 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 10 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr314 b:53.6 occ:0.74 HD13 A:ILE58 2.9 23.7 1.0 HG13 A:ILE91 3.0 28.7 1.0 HD11 A:ILE91 3.0 24.1 1.0 HE1 A:MET61 3.1 24.3 1.0 HG23 A:ILE58 3.5 34.3 1.0 HD12 A:ILE91 3.6 24.1 1.0 CD1 A:ILE91 3.6 19.9 1.0 CD1 A:ILE58 3.7 19.6 1.0 CG1 A:ILE91 3.7 23.8 1.0 HG12 A:ILE58 3.7 27.7 1.0 HG21 A:ILE99 3.7 23.9 1.0 CE A:MET61 3.8 20.1 1.0 HD11 A:ILE58 3.8 23.7 1.0 HE2 A:MET61 3.9 24.3 1.0 HE3 A:MET61 3.9 24.3 1.0 HA3 A:GLY92 3.9 22.8 1.0 HD13 A:ILE99 4.0 26.6 1.0 HZ A:PHE45 4.0 20.0 1.0 HD22 A:LEU13 4.1 22.9 1.0 HG21 A:ILE58 4.1 34.3 1.0 HG12 A:ILE91 4.1 28.7 1.0 CG1 A:ILE58 4.2 22.9 1.0 CG2 A:ILE58 4.2 28.5 1.0 HB2 A:ALA104 4.3 26.3 1.0 HD12 A:ILE99 4.3 26.6 1.0 HE2 A:PHE108 4.4 20.8 1.0 CZ A:PHE45 4.4 16.5 1.0 HG22 A:ILE99 4.5 23.9 1.0 HD12 A:ILE58 4.5 23.7 1.0 CG2 A:ILE99 4.5 19.8 1.0 HB A:ILE99 4.5 24.4 1.0 HD13 A:ILE91 4.5 24.1 1.0 O A:ILE91 4.5 13.5 1.0 HB1 A:ALA104 4.6 26.3 1.0 CD1 A:ILE99 4.6 22.0 1.0 HD3 B:PRO23 4.7 29.6 1.0 C A:ILE91 4.7 25.3 1.0 CB A:ILE58 4.8 20.8 1.0 HE2 A:PHE45 4.8 15.9 1.0 HD21 A:LEU13 4.8 22.9 1.0 HD13 A:LEU13 4.8 22.2 1.0 CA A:GLY92 4.8 18.9 1.0 HB A:ILE91 4.8 22.0 1.0 CE2 A:PHE45 4.9 13.1 1.0 HA A:ILE58 4.9 25.6 1.0 CD2 A:LEU13 4.9 18.9 1.0 CB A:ILE91 4.9 18.2 1.0 CB A:ALA104 4.9 21.8 1.0 N A:GLY92 5.0 21.5 1.0 O A:HOH433 5.0 22.5 1.0 CB A:ILE99 5.0 20.2 1.0

S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias. Exploring the Gas Access Routes in A [Nifese] Hydrogenase Using Crystals Pressurized with Krypton and Oxygen. J.Biol.Inorg.Chem. V. 25 863 2020.
ISSN: ESSN 1432-1327
PubMed: 32865640
DOI: 10.1007/S00775-020-01814-Y