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Krypton in PDB 6z8o: Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr

Enzymatic activity of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr

All present enzymatic activity of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr:
1.12.7.2;

Protein crystallography data

The structure of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr, PDB code: 6z8o was solved by S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.12 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.716, 97.022, 121.318, 90.00, 104.66, 90.00
R / Rfree (%) 22.6 / 27.5

Other elements in 6z8o:

The structure of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Iron (Fe) 36 atoms
Chlorine (Cl) 2 atoms

Krypton Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Krypton atom in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr (pdb code 6z8o). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 20 binding sites of Krypton where determined in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr, PDB code: 6z8o:
Jump to Krypton binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Krypton binding site 1 out of 20 in 6z8o

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Krypton binding site 1 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr305

b:57.0
occ:0.76
HZ B:PHE139 2.9 68.7 1.0
HD11 A:LEU38 3.1 61.3 1.0
HA A:ALA34 3.3 60.2 1.0
HD21 A:LEU38 3.4 66.2 1.0
HE1 B:TYR162 3.4 57.4 1.0
HE2 B:PHE139 3.4 73.4 1.0
HD12 A:LEU37 3.5 52.0 1.0
HG A:LEU38 3.5 62.6 1.0
CZ B:PHE139 3.7 56.1 1.0
HB2 A:LEU37 3.7 54.8 1.0
HB1 A:ALA34 3.8 58.4 1.0
CD1 A:LEU38 3.8 49.9 1.0
HD11 B:LEU166 3.9 57.7 1.0
CE2 B:PHE139 3.9 60.0 1.0
CG A:LEU38 4.0 51.0 1.0
CD2 A:LEU38 4.1 54.0 1.0
HD12 A:LEU38 4.1 61.3 1.0
CA A:ALA34 4.1 49.0 1.0
HB2 A:ALA34 4.1 58.4 1.0
CB A:ALA34 4.2 47.5 1.0
HH B:TYR162 4.2 55.9 1.0
CE1 B:TYR162 4.3 46.7 1.0
HD23 A:LEU38 4.3 66.2 1.0
CD1 A:LEU37 4.3 42.1 1.0
HB3 A:LEU37 4.3 54.8 1.0
O A:ALA34 4.4 50.4 1.0
CB A:LEU37 4.4 44.5 1.0
HD13 A:LEU37 4.4 52.0 1.0
CD1 B:LEU166 4.5 46.9 1.0
HD13 B:LEU166 4.5 57.7 1.0
HD12 B:LEU166 4.6 57.7 1.0
HG12 B:ILE163 4.6 60.8 1.0
HD13 A:LEU38 4.6 61.3 1.0
C A:ALA34 4.8 48.9 1.0
CE1 B:PHE139 4.9 54.0 1.0
OH B:TYR162 4.9 45.4 1.0
HD22 A:LEU38 4.9 66.2 1.0
CG A:LEU37 4.9 42.2 1.0
HD1 B:TYR162 5.0 59.6 1.0

Krypton binding site 2 out of 20 in 6z8o

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Krypton binding site 2 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr306

b:58.1
occ:0.71
HA A:VAL170 3.1 60.6 1.0
HD11 A:LEU116 3.1 42.4 1.0
HG22 A:VAL170 3.1 58.1 1.0
CE1 A:PHE73 3.3 46.1 1.0
HB3 A:ALA173 3.3 64.4 1.0
CD1 A:PHE73 3.3 39.5 1.0
HE1 A:PHE73 3.3 56.8 1.0
HD1 A:PHE73 3.3 48.9 1.0
HG13 A:VAL170 3.5 51.1 1.0
HG A:LEU174 3.6 54.4 1.0
O A:VAL170 3.8 49.0 1.0
HD23 A:LEU174 3.8 53.5 1.0
HD21 A:LEU174 3.8 53.5 1.0
CA A:VAL170 3.9 49.3 1.0
CZ A:PHE73 3.9 45.5 1.0
CG A:PHE73 4.0 40.4 1.0
KR A:KR309 4.0 46.9 0.4
CG2 A:VAL170 4.0 47.2 1.0
CD1 A:LEU116 4.0 34.2 1.0
HB1 A:ALA173 4.1 64.4 1.0
CB A:ALA173 4.1 52.5 1.0
HD12 A:LEU116 4.2 42.4 1.0
CD2 A:LEU174 4.2 43.4 1.0
C A:VAL170 4.3 43.5 1.0
CG1 A:VAL170 4.3 41.4 1.0
CB A:VAL170 4.3 42.5 1.0
HZ A:PHE73 4.3 56.0 1.0
HB3 A:PHE73 4.4 53.7 1.0
CG A:LEU174 4.4 44.1 1.0
HG23 A:VAL170 4.4 58.1 1.0
HD13 A:LEU116 4.5 42.4 1.0
CE2 A:PHE73 4.5 45.5 1.0
CD2 A:PHE73 4.5 40.9 1.0
H A:LEU174 4.5 61.4 1.0
HB2 A:ALA173 4.5 64.4 1.0
HD21 A:LEU116 4.5 51.5 1.0
HG21 A:VAL170 4.6 58.1 1.0
CB A:PHE73 4.7 43.6 1.0
HG11 A:VAL170 4.7 51.1 1.0
HD11 A:LEU174 4.8 51.7 1.0
HG A:LEU116 4.9 42.2 1.0
N A:LEU174 4.9 50.0 1.0
HB2 A:PHE73 4.9 53.7 1.0
HG12 A:VAL170 5.0 51.1 1.0
O A:THR169 5.0 50.3 1.0
CG A:LEU116 5.0 34.0 1.0

Krypton binding site 3 out of 20 in 6z8o

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Krypton binding site 3 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr307

b:45.1
occ:0.57
HG21 A:VAL170 2.7 58.1 1.0
HG11 A:VAL36 3.3 56.3 1.0
HD13 A:ILE41 3.3 55.6 1.0
HD21 A:LEU25 3.5 48.4 1.0
CG2 A:VAL170 3.6 47.2 1.0
HG22 A:ILE166 3.6 48.5 1.0
HG23 A:VAL170 3.8 58.1 1.0
HD11 A:LEU25 3.8 49.4 1.0
HG13 A:VAL36 3.8 56.3 1.0
HA A:VAL167 3.9 49.9 1.0
CG1 A:VAL36 3.9 45.8 1.0
HG11 A:VAL170 3.9 51.1 1.0
HB A:VAL170 3.9 52.4 1.0
HG12 A:VAL36 4.0 56.3 1.0
HG22 A:VAL167 4.1 47.0 1.0
HD22 A:LEU25 4.1 48.4 1.0
CD1 A:ILE41 4.2 45.1 1.0
CB A:VAL170 4.2 42.5 1.0
HG22 A:VAL170 4.3 58.1 1.0
HD11 A:ILE41 4.3 55.6 1.0
CD2 A:LEU25 4.3 39.1 1.0
HD13 A:LEU25 4.3 49.4 1.0
HZ3 A:TRP12 4.3 49.2 1.0
HG21 A:ILE41 4.3 51.9 1.0
HG21 A:ILE166 4.3 48.5 1.0
CG2 A:ILE166 4.4 39.2 1.0
CD1 A:LEU25 4.5 40.0 1.0
CG1 A:VAL170 4.6 41.4 1.0
HD12 A:ILE41 4.7 55.6 1.0
HG12 A:ILE41 4.7 54.3 1.0
CA A:VAL167 4.7 40.4 1.0
HG23 A:ILE166 4.8 48.5 1.0
HG23 A:ILE41 4.8 51.9 1.0
HG23 A:VAL167 4.9 47.0 1.0
CG2 A:VAL167 4.9 38.0 1.0
N A:VAL167 4.9 37.8 1.0
HD23 A:LEU25 5.0 48.4 1.0

Krypton binding site 4 out of 20 in 6z8o

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Krypton binding site 4 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr308

b:52.4
occ:0.87
HD21 A:LEU26 3.2 51.9 1.0
HG11 A:VAL49 3.3 39.9 1.0
HD23 A:LEU25 3.5 48.4 1.0
HE2 A:HIS46 3.6 35.8 1.0
HD23 A:LEU26 3.6 51.9 1.0
NE2 A:HIS46 3.8 28.6 1.0
HD2 A:HIS46 3.8 32.8 1.0
HB3 A:SER22 3.9 50.5 1.0
CD2 A:LEU26 3.9 42.0 1.0
CD2 A:HIS46 3.9 26.1 1.0
HD11 A:ILE33 4.0 51.6 1.0
HD21 A:LEU43 4.1 52.5 1.0
HG13 A:VAL49 4.1 39.9 1.0
HG21 A:VAL49 4.1 37.3 1.0
CG1 A:VAL49 4.2 32.1 1.0
HG12 A:ILE33 4.2 56.3 1.0
HD21 A:LEU37 4.3 53.4 1.0
HG A:LEU26 4.3 46.6 1.0
CD2 A:LEU25 4.4 39.1 1.0
HA A:SER22 4.4 56.0 1.0
HD11 A:LEU37 4.4 52.0 1.0
HD22 A:LEU43 4.4 52.5 1.0
HB3 A:LEU25 4.5 50.9 1.0
O A:SER22 4.5 42.6 1.0
CE1 A:HIS46 4.6 28.0 1.0
HD21 A:LEU25 4.6 48.4 1.0
HD22 A:LEU26 4.6 51.9 1.0
CD2 A:LEU43 4.6 42.6 1.0
CG A:LEU26 4.7 37.6 1.0
HG A:LEU25 4.7 48.0 1.0
CB A:SER22 4.7 40.9 1.0
HG12 A:VAL49 4.7 39.9 1.0
CG A:HIS46 4.8 28.5 1.0
CD1 A:ILE33 4.8 41.8 1.0
HD11 A:LEU26 4.8 36.3 1.0
HG22 A:VAL49 4.8 37.3 1.0
CG2 A:VAL49 4.8 29.9 1.0
HD23 A:LEU43 4.8 52.5 1.0
CG1 A:ILE33 4.9 45.8 1.0
CA A:SER22 4.9 45.5 1.0
HD13 A:ILE33 4.9 51.6 1.0
HE1 A:HIS46 5.0 35.1 1.0

Krypton binding site 5 out of 20 in 6z8o

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Krypton binding site 5 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 5 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr309

b:46.9
occ:0.44
HD21 A:LEU116 3.0 51.5 1.0
HB3 A:ALA114 3.1 49.6 1.0
HE1 A:PHE73 3.1 56.8 1.0
HB1 A:ALA173 3.2 64.4 1.0
HG11 A:VAL189 3.4 68.2 1.0
HB1 A:ALA114 3.4 49.6 1.0
HG21 A:VAL154 3.4 53.6 1.0
CB A:ALA114 3.5 40.1 1.0
HB2 A:ALA173 3.6 64.4 1.0
HB2 A:ALA114 3.6 49.6 1.0
CB A:ALA173 3.7 52.5 1.0
HD1 A:PHE73 3.8 48.9 1.0
HD23 A:LEU116 3.8 51.5 1.0
HB3 A:ALA173 3.8 64.4 1.0
CD2 A:LEU116 3.8 41.7 1.0
HD22 A:LEU186 3.8 69.1 1.0
CE1 A:PHE73 3.9 46.1 1.0
HG23 A:VAL154 4.0 53.6 1.0
KR A:KR306 4.0 58.1 0.7
HD11 A:LEU116 4.0 42.4 1.0
HG21 A:VAL189 4.0 66.0 1.0
CG2 A:VAL154 4.1 43.5 1.0
CD1 A:PHE73 4.2 39.5 1.0
CG1 A:VAL189 4.3 55.7 1.0
HD21 A:LEU186 4.3 69.1 1.0
HG A:LEU116 4.4 42.2 1.0
CD2 A:LEU186 4.5 56.4 1.0
HD22 A:LEU116 4.5 51.5 1.0
HB A:VAL154 4.5 46.6 1.0
CG A:LEU116 4.5 34.0 1.0
HG12 A:VAL189 4.7 68.2 1.0
CD1 A:LEU116 4.7 34.2 1.0
HG13 A:VAL189 4.8 68.2 1.0
HD11 A:ILE177 4.8 62.9 1.0
HD23 A:LEU186 4.8 69.1 1.0
HG22 A:VAL154 4.9 53.6 1.0
CG2 A:VAL189 4.9 53.8 1.0
CB A:VAL154 4.9 37.6 1.0

Krypton binding site 6 out of 20 in 6z8o

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Krypton binding site 6 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 6 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr310

b:36.5
occ:0.46
HD11 A:LEU26 2.9 36.3 1.0
HG21 A:THR48 2.9 49.2 1.0
HG23 A:VAL23 3.3 42.0 1.0
HG22 A:VAL23 3.3 42.0 1.0
HB2 A:SER22 3.5 50.5 1.0
HD12 A:LEU26 3.6 36.3 1.0
HB3 A:SER22 3.6 50.5 1.0
HG22 A:THR19 3.6 48.1 1.0
CD1 A:LEU26 3.7 29.0 1.0
CG2 A:THR48 3.8 39.8 1.0
CG2 A:VAL23 3.8 33.8 1.0
HG22 A:THR48 3.8 49.2 1.0
HG21 A:THR19 3.8 48.1 1.0
HD11 B:LEU120 3.9 46.8 1.0
HG23 A:THR19 4.0 48.1 1.0
HA A:VAL23 4.0 46.1 1.0
CB A:SER22 4.0 40.9 1.0
CG2 A:THR19 4.0 38.9 1.0
HB A:THR48 4.2 36.6 1.0
HD13 A:LEU26 4.2 36.3 1.0
HD21 B:LEU120 4.3 35.9 1.0
HG21 A:VAL23 4.4 42.0 1.0
HG12 A:VAL49 4.4 39.9 1.0
HG23 A:THR48 4.4 49.2 1.0
HG A:LEU26 4.5 46.6 1.0
N A:VAL23 4.5 50.0 1.0
CB A:THR48 4.5 29.4 1.0
HG13 A:VAL49 4.6 39.9 1.0
C A:SER22 4.6 45.5 1.0
CA A:VAL23 4.6 37.2 1.0
HG22 B:VAL77 4.7 39.4 1.0
CG A:LEU26 4.7 37.6 1.0
HG1 A:THR48 4.7 35.7 1.0
H A:VAL23 4.7 61.4 1.0
HD21 A:LEU26 4.8 51.9 1.0
HD21 B:LEU125 4.8 49.8 1.0
CD1 B:LEU120 4.8 37.8 1.0
CB A:VAL23 4.8 36.7 1.0
CG1 A:VAL49 4.9 32.1 1.0
O A:SER22 4.9 42.6 1.0
HE1 A:HIS46 5.0 35.1 1.0
HG11 A:VAL49 5.0 39.9 1.0
HD13 B:LEU120 5.0 46.8 1.0
CA A:SER22 5.0 45.5 1.0

Krypton binding site 7 out of 20 in 6z8o

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Krypton binding site 7 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 7 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr506

b:44.0
occ:0.52
HA2 B:GLY158 3.0 74.5 1.0
HE2 B:PHE122 3.0 58.4 1.0
HB1 B:ALA127 3.1 59.4 1.0
HG21 B:VAL131 3.2 67.9 1.0
HD11 B:ILE228 3.2 69.6 1.0
O B:GLY158 3.4 55.5 1.0
HA3 B:GLY158 3.5 74.5 1.0
CA B:GLY158 3.6 60.9 1.0
HG21 B:VAL224 3.6 68.7 1.0
HE1 B:TYR123 3.6 59.1 1.0
CE2 B:PHE122 3.7 47.5 1.0
HD12 B:ILE228 3.7 69.6 1.0
HB2 B:ALA127 3.7 59.4 1.0
HD1 B:TYR123 3.8 56.8 1.0
CD1 B:ILE228 3.8 56.8 1.0
CB B:ALA127 3.9 48.3 1.0
C B:GLY158 3.9 57.0 1.0
HZ B:PHE122 4.0 63.1 1.0
HD13 B:ILE228 4.0 69.6 1.0
CE1 B:TYR123 4.1 48.1 1.0
HG22 B:VAL224 4.1 68.7 1.0
CG2 B:VAL131 4.1 55.4 1.0
HG11 B:VAL224 4.1 67.7 1.0
CD1 B:TYR123 4.2 46.2 1.0
CZ B:PHE122 4.2 51.4 1.0
HB3 B:ALA127 4.3 59.4 1.0
CG2 B:VAL224 4.3 56.1 1.0
HG23 B:VAL131 4.4 67.9 1.0
HB2 B:GLN161 4.4 65.4 1.0
HG13 B:VAL224 4.4 67.7 1.0
HG22 B:VAL131 4.5 67.9 1.0
HA B:TYR123 4.6 47.0 1.0
CD2 B:PHE122 4.6 46.5 1.0
HG11 B:VAL131 4.6 73.4 1.0
H B:TYR162 4.7 65.0 1.0
HD2 B:PHE122 4.7 57.2 1.0
CG1 B:VAL224 4.7 55.2 1.0
HB2 B:TYR162 4.8 59.0 1.0
OE1 B:GLN161 4.9 55.1 1.0
N B:GLY158 4.9 62.9 1.0
HG23 B:VAL224 5.0 68.7 1.0
HH B:TYR123 5.0 67.3 1.0

Krypton binding site 8 out of 20 in 6z8o

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Krypton binding site 8 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 8 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr507

b:40.7
occ:0.52
KR B:KR508 2.0 36.3 0.2
HD11 A:LEU37 3.2 52.0 1.0
HD21 B:LEU166 3.3 53.6 1.0
OH B:TYR162 3.3 45.4 1.0
HH B:TYR162 3.4 55.9 1.0
HD12 A:LEU37 3.4 52.0 1.0
HD22 A:LEU26 3.6 51.9 1.0
HD21 A:LEU26 3.7 51.9 1.0
CD1 A:LEU37 3.7 42.1 1.0
HG11 A:VAL49 3.7 39.9 1.0
HB A:VAL49 3.9 45.8 1.0
HD13 A:LEU37 4.1 52.0 1.0
CD2 A:LEU26 4.1 42.0 1.0
CD2 B:LEU166 4.2 43.5 1.0
HG13 A:ILE33 4.2 56.3 1.0
HD22 B:LEU166 4.2 53.6 1.0
HG12 A:ILE33 4.3 56.3 1.0
HD11 B:LEU166 4.3 57.7 1.0
CZ B:TYR162 4.3 42.4 1.0
HG12 A:VAL49 4.3 39.9 1.0
CG1 A:VAL49 4.4 32.1 1.0
HE1 B:TYR162 4.4 57.4 1.0
HD23 A:LEU26 4.4 51.9 1.0
HB3 B:HIS124 4.5 57.3 1.0
HD2 B:HIS124 4.5 45.5 1.0
HG23 A:ILE33 4.5 50.9 1.0
HG21 A:VAL49 4.6 37.3 1.0
CB A:VAL49 4.6 37.0 1.0
HG21 A:ILE33 4.6 50.9 1.0
HD23 B:LEU166 4.7 53.6 1.0
CG1 A:ILE33 4.7 45.8 1.0
CE1 B:TYR162 4.7 46.7 1.0
HZ B:PHE139 4.7 68.7 1.0
HE1 B:PHE139 4.7 66.2 1.0
HD13 B:LEU166 4.8 57.7 1.0
CD1 B:LEU166 4.9 46.9 1.0

Krypton binding site 9 out of 20 in 6z8o

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Krypton binding site 9 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 9 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr508

b:36.3
occ:0.24
KR B:KR507 2.0 40.7 0.5
HB3 B:HIS124 2.8 57.3 1.0
HD21 B:LEU166 3.2 53.6 1.0
HD22 A:LEU26 3.4 51.9 1.0
HD21 A:LEU26 3.5 51.9 1.0
HG12 A:VAL49 3.5 39.9 1.0
HG11 A:VAL49 3.6 39.9 1.0
HD2 B:HIS124 3.7 45.5 1.0
CB B:HIS124 3.7 46.6 1.0
OH B:TYR162 3.7 45.4 1.0
CG B:HIS124 3.9 41.1 1.0
CD2 A:LEU26 3.9 42.0 1.0
CD2 B:HIS124 3.9 36.8 1.0
HB A:VAL49 3.9 45.8 1.0
HD13 A:LEU26 4.0 36.3 1.0
CG1 A:VAL49 4.0 32.1 1.0
CD2 B:LEU166 4.0 43.5 1.0
HD23 B:LEU166 4.1 53.6 1.0
HB2 B:HIS124 4.1 57.3 1.0
HH B:TYR162 4.2 55.9 1.0
HD11 A:LEU26 4.2 36.3 1.0
HD22 B:LEU166 4.2 53.6 1.0
CZ B:TYR162 4.5 42.4 1.0
CD1 A:LEU26 4.5 29.0 1.0
CB A:VAL49 4.5 37.0 1.0
HD23 A:LEU26 4.6 51.9 1.0
HA B:HIS124 4.6 56.8 1.0
CA B:HIS124 4.8 46.1 1.0
HG13 A:VAL49 4.8 39.9 1.0
CG A:LEU26 4.8 37.6 1.0
NE2 B:HIS124 4.9 40.0 1.0
ND1 B:HIS124 4.9 47.6 1.0
HD12 B:LEU120 4.9 46.8 1.0
HE2 B:TYR162 4.9 57.6 1.0

Krypton binding site 10 out of 20 in 6z8o

Go back to Krypton Binding Sites List in 6z8o
Krypton binding site 10 out of 20 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 10 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Kr509

b:46.0
occ:0.50
HB B:VAL131 2.9 70.8 1.0
HG11 B:VAL131 3.0 73.4 1.0
HG12 B:VAL131 3.1 73.4 1.0
HG2 B:GLN128 3.1 59.5 1.0
CG1 B:VAL131 3.4 60.0 1.0
HD2 B:TYR162 3.5 59.4 1.0
HG22 B:VAL159 3.6 75.1 1.0
CB B:VAL131 3.6 57.8 1.0
HB2 B:TYR162 3.7 59.0 1.0
HA B:VAL159 3.8 70.8 1.0
CD2 B:TYR162 3.8 48.3 1.0
HG3 B:GLN128 3.9 59.5 1.0
HA B:GLN128 3.9 59.3 1.0
CG B:GLN128 3.9 48.4 1.0
HA2 B:GLY133 4.0 82.0 1.0
HB3 B:ALA127 4.1 59.4 1.0
HG23 B:VAL159 4.1 75.1 1.0
HB3 B:TYR162 4.2 59.0 1.0
HG21 B:VAL131 4.2 67.9 1.0
CG B:TYR162 4.2 49.0 1.0
CB B:TYR162 4.3 48.0 1.0
O B:VAL131 4.3 58.2 1.0
HG13 B:VAL131 4.3 73.4 1.0
CG2 B:VAL159 4.3 61.4 1.0
HB1 B:ALA127 4.3 59.4 1.0
H B:GLY133 4.4 81.4 1.0
N B:GLY133 4.5 66.7 1.0
HA3 B:GLY133 4.5 82.0 1.0
CE2 B:TYR162 4.5 46.8 1.0
CA B:GLY133 4.5 67.2 1.0
CG2 B:VAL131 4.5 55.4 1.0
C B:VAL131 4.6 58.8 1.0
N B:GLN128 4.6 51.0 1.0
CA B:GLN128 4.6 48.2 1.0
O B:GLY158 4.6 55.5 1.0
CA B:VAL159 4.6 57.8 1.0
CB B:ALA127 4.7 48.3 1.0
HE2 B:TYR162 4.7 57.6 1.0
CA B:VAL131 4.7 59.3 1.0
H B:GLN128 4.7 62.6 1.0
O B:TYR123 4.8 45.1 1.0
C B:ALA127 4.8 53.5 1.0
CD B:GLN128 4.9 48.3 1.0
CB B:GLN128 4.9 49.5 1.0
C B:GLY158 4.9 57.0 1.0
N B:VAL159 5.0 61.1 1.0
O B:ALA127 5.0 56.3 1.0
HG23 B:VAL131 5.0 67.9 1.0

Reference:

S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias. Exploring the Gas Access Routes in A [Nifese] Hydrogenase Using Crystals Pressurized with Krypton and Oxygen. J.Biol.Inorg.Chem. V. 25 863 2020.
ISSN: ESSN 1432-1327
PubMed: 32865640
DOI: 10.1007/S00775-020-01814-Y
Page generated: Mon Dec 14 02:56:55 2020

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