Krypton in PDB 7r2s: Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas

The structure of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas, PDB code: 7r2s was solved by P.T.Borges, M.Teixeira, C.V.Romao, C.Frazao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.34 / 2.19
Space group	I 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.952, 64.425, 147.08, 90, 91.46, 90
R / Rfree (%)	25.4 / 29.5

The structure of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Krypton atom in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas (pdb code 7r2s). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 6 binding sites of Krypton where determined in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas, PDB code: 7r2s:
Jump to Krypton binding site number: 1; 2; 3; 4; 5; 6;

Krypton binding site 1 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr505 b:38.7 occ:0.45 CG2 A:ILE213 4.0 22.4 1.0 CZ A:PHE168 4.0 23.5 1.0 CD1 A:ILE213 4.0 28.1 1.0 CG2 A:ILE210 4.1 26.2 1.0 CB A:ILE213 4.2 25.3 1.0 CG1 A:ILE210 4.3 18.4 1.0 CE2 A:PHE168 4.3 16.8 1.0 CG1 A:VAL239 4.3 24.6 1.0 CA A:ILE210 4.4 25.4 1.0 CG2 A:VAL239 4.4 22.3 1.0 CB A:ILE210 4.5 23.3 1.0 O A:ILE210 4.7 33.2 1.0 CD2 A:LEU162 4.7 18.8 1.0 CG1 A:ILE213 4.7 21.9 1.0 CD1 A:ILE210 4.9 25.3 1.0

Krypton binding site 2 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr506 b:58.0 occ:0.60 CD2 A:LEU146 3.9 48.9 1.0 CZ A:PHE168 3.9 23.5 1.0 CG1 A:ILE210 4.2 18.4 1.0 CB A:ALA167 4.2 31.9 1.0 CE1 A:PHE168 4.4 24.1 1.0 CG1 A:VAL206 4.4 14.7 1.0 CD2 A:TYR242 4.4 22.2 1.0 CE2 A:PHE168 4.5 16.8 1.0 CD1 A:ILE210 4.5 25.3 1.0 CE2 A:TYR242 4.7 14.8 1.0 O A:VAL206 4.8 32.1 1.0 CG A:LEU146 4.8 43.7 1.0 CG A:LYS209 4.9 18.1 1.0 CA A:VAL206 4.9 30.6 1.0 CG2 A:VAL206 5.0 21.9 1.0

Krypton binding site 3 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ A:Kr507 b:34.8 occ:0.50 O A:LEU146 3.3 18.3 1.0 CD2 A:LEU199 3.4 26.9 1.0 N A:ALA167 3.4 16.5 1.0 C A:LEU146 3.6 22.8 1.0 CA A:ALA167 3.6 25.1 1.0 O A:HOH671 3.6 28.2 1.0 CB A:ASP166 3.7 11.4 1.0 N A:HIS147 3.7 17.8 1.0 C A:ASP166 3.8 26.4 1.0 CD1 A:LEU199 3.9 18.1 1.0 CB A:ALA167 3.9 31.9 1.0 CG A:LEU199 4.2 25.5 1.0 CD2 A:HIS147 4.3 27.9 1.0 O A:ASP166 4.3 29.5 1.0 CA A:ASP166 4.4 23.7 1.0 O A:HOH643 4.4 26.8 1.0 CA A:LEU146 4.5 21.4 1.0 CB A:HIS147 4.5 16.5 1.0 CB A:LEU146 4.6 25.4 1.0 CA A:HIS147 4.6 19.5 1.0 CG A:HIS147 4.8 22.9 1.0 OH A:TYR194 4.9 41.0 1.0

Krypton binding site 4 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ B:Kr505 b:32.9 occ:0.50 O B:LEU146 3.3 23.0 1.0 CD2 B:LEU199 3.4 20.9 1.0 C B:LEU146 3.5 23.6 1.0 N B:ALA167 3.6 14.6 1.0 CA B:ALA167 3.7 29.7 1.0 N B:HIS147 3.7 25.0 1.0 CB B:ASP166 3.9 14.1 1.0 CD1 B:LEU199 3.9 25.7 1.0 C B:ASP166 3.9 21.2 1.0 CB B:ALA167 4.0 23.0 1.0 O B:HOH715 4.0 32.2 1.0 CG B:LEU199 4.3 25.9 1.0 CA B:LEU146 4.4 28.3 1.0 O B:ASP166 4.4 25.2 1.0 CD2 B:HIS147 4.4 29.8 1.0 CB B:LEU146 4.5 33.6 1.0 CA B:ASP166 4.5 26.0 1.0 O B:HOH622 4.5 23.5 1.0 CB B:HIS147 4.6 23.4 1.0 CA B:HIS147 4.6 30.0 1.0 CG B:HIS147 4.9 26.5 1.0

Krypton binding site 5 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 5 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ B:Kr506 b:54.5 occ:0.59 CZ B:PHE168 3.9 28.1 1.0 CG1 B:ILE210 4.1 34.3 1.0 CB B:ALA167 4.2 23.0 1.0 CD1 B:LEU146 4.3 43.3 1.0 CG1 B:VAL206 4.4 27.9 1.0 CD1 B:ILE210 4.4 33.7 1.0 CE2 B:PHE168 4.4 21.5 1.0 CE1 B:PHE168 4.4 19.1 1.0 CD2 B:TYR242 4.5 19.8 1.0 O B:VAL206 4.7 33.9 1.0 CE2 B:TYR242 4.8 14.2 1.0 O B:HOH715 4.8 32.2 1.0 CA B:VAL206 4.9 31.6 1.0 CG2 B:VAL206 4.9 20.3 1.0 CB B:VAL206 5.0 26.7 1.0 CG B:LYS209 5.0 30.4 1.0

Krypton binding site 6 out of 6 in the Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 6 of Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas within 5.0Å range: probe atom residue distance (Å) B Occ B:Kr507 b:36.0 occ:0.37 CG2 B:ILE213 3.9 34.3 1.0 CD1 B:ILE213 3.9 34.1 1.0 CZ B:PHE168 4.0 28.1 1.0 CE2 B:PHE168 4.1 21.5 1.0 CD2 B:LEU162 4.1 29.9 1.0 CB B:ILE213 4.3 32.7 1.0 CG2 B:VAL239 4.4 27.0 1.0 CG2 B:ILE210 4.5 31.7 1.0 CG1 B:ILE210 4.7 34.3 1.0 CG1 B:VAL239 4.7 25.8 1.0 CG1 B:ILE213 4.7 31.9 1.0 CE B:MET153 4.8 24.5 1.0 CA B:ILE210 4.9 34.9 1.0 CB B:ILE210 5.0 33.8 1.0

P.T.Borges, M.Teixeira, C.V.Romao, C.Frazao. Crystal Structure of A Flavodiiron Protein D52K Mutant From Escherichia Coli Pressurized with Krypton Gas To Be Published.