Atomistry » Krypton » PDB 1c61-8rxj » 8rxj
Atomistry »
  Krypton »
    PDB 1c61-8rxj »
      8rxj »

Krypton in PDB 8rxj: Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton

Enzymatic activity of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton

All present enzymatic activity of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton:
1.12.7.2;

Protein crystallography data

The structure of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton, PDB code: 8rxj was solved by K.Bikbaev, T.Harand, L.Scheuenstuhl, P.Carpentier, I.Span, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.50 / 1.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.376, 86.931, 88.889, 90, 90, 90
R / Rfree (%) 15.8 / 18.6

Other elements in 8rxj:

The structure of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton also contains other interesting chemical elements:

Iron (Fe) 14 atoms

Krypton Binding Sites:

The binding sites of Krypton atom in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton (pdb code 8rxj). This binding sites where shown within 5.0 Angstroms radius around Krypton atom.
In total 10 binding sites of Krypton where determined in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton, PDB code: 8rxj:
Jump to Krypton binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Krypton binding site 1 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 1 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 1 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr501

b:24.1
occ:0.40
HB3 A:GLU156 3.0 18.6 1.0
HZ A:PHE372 3.0 27.5 1.0
HD13 A:ILE153 3.1 15.9 1.0
HG11 A:VAL302 3.1 18.5 1.0
HB1 A:ALA306 3.1 18.4 1.0
HG2 A:GLU156 3.2 21.1 1.0
HG12 A:VAL302 3.2 18.5 1.0
CD A:GLU156 3.3 24.6 1.0
OE1 A:GLU156 3.3 24.0 1.0
CG1 A:VAL302 3.5 18.7 1.0
CG A:GLU156 3.5 20.9 1.0
HG13 A:VAL302 3.6 18.5 1.0
CB A:GLU156 3.7 18.4 1.0
OE2 A:GLU156 3.7 22.6 1.0
CD1 A:ILE153 3.7 16.0 1.0
HD11 A:ILE153 3.8 15.9 1.0
HD12 A:ILE153 3.8 15.9 1.0
CZ A:PHE372 3.9 27.5 1.0
HG23 A:THR176 3.9 17.4 1.0
HE2 A:PHE372 3.9 28.3 1.0
KR A:KR508 3.9 24.2 0.1
CB A:ALA306 4.0 19.0 1.0
HB3 A:ALA306 4.1 18.4 1.0
HA A:ILE153 4.1 16.5 1.0
HG23 A:THR152 4.2 17.1 1.0
HB2 A:GLU156 4.2 18.6 1.0
CE2 A:PHE372 4.3 28.9 1.0
HB2 A:ALA306 4.5 18.4 1.0
O A:HOH705 4.5 26.3 1.0
HG3 A:GLU156 4.5 21.1 1.0
O A:VAL302 4.5 17.6 1.0
HZ A:PHE296 4.7 15.6 1.0
H A:GLY157 4.7 21.4 1.0
O A:HOH621 4.8 17.1 1.0
CG2 A:THR176 4.8 17.6 1.0
C A:GLU156 4.8 20.1 1.0
HA A:ALA306 4.8 17.3 1.0
N A:GLY157 4.9 21.6 1.0
CA A:GLU156 4.9 17.0 1.0
HG21 A:THR176 4.9 17.4 1.0
CB A:VAL302 5.0 18.1 1.0
O A:THR152 5.0 16.0 1.0
CE1 A:PHE372 5.0 26.4 1.0

Krypton binding site 2 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 2 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 2 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr502

b:26.1
occ:0.77
HD21 A:LEU307 2.9 22.5 1.0
HD2 A:PHE372 3.1 27.4 1.0
HB3 A:ALA306 3.3 18.4 1.0
HD2 A:PHE160 3.3 25.1 1.0
HE2 A:PHE160 3.3 24.6 1.0
HA A:LEU307 3.4 18.2 1.0
HB1 A:ALA310 3.4 23.2 1.0
HE2 A:PHE372 3.6 28.3 1.0
HB2 A:ALA310 3.6 23.2 1.0
HB2 A:ALA306 3.6 18.4 1.0
HG A:LEU307 3.7 21.0 1.0
CD2 A:LEU307 3.7 23.2 1.0
HD23 A:LEU307 3.7 22.5 1.0
CD2 A:PHE160 3.7 26.5 1.0
CE2 A:PHE160 3.8 23.9 1.0
C A:ALA306 3.8 17.1 1.0
CB A:ALA306 3.9 19.0 1.0
O A:ALA306 3.9 18.0 1.0
CD2 A:PHE372 3.9 28.2 1.0
CB A:ALA310 3.9 23.9 1.0
N A:LEU307 4.0 16.0 1.0
HB3 A:ALA310 4.1 23.3 1.0
CA A:LEU307 4.1 18.8 1.0
CE2 A:PHE372 4.1 28.9 1.0
CG A:LEU307 4.2 20.9 1.0
KR A:KR508 4.2 24.2 0.1
H A:LEU307 4.3 16.9 1.0
HG13 A:VAL345 4.4 32.2 1.0
HG13 A:VAL347 4.4 23.4 1.0
CA A:ALA306 4.5 17.0 1.0
HD22 A:LEU307 4.5 22.6 1.0
KR A:KR503 4.6 37.9 0.6
SD A:MET303 4.6 22.6 1.0
HB1 A:ALA306 4.7 18.4 1.0
CB A:LEU307 4.7 19.5 1.0
O A:MET303 4.8 17.0 1.0
CG A:PHE160 4.9 23.8 1.0
CZ A:PHE160 4.9 24.8 1.0
H A:ALA310 4.9 19.8 1.0

Krypton binding site 3 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 3 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 3 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr503

b:37.9
occ:0.57
HB3 A:ALA310 2.9 23.3 1.0
HG21 A:VAL345 3.0 32.0 1.0
HE2 A:PHE160 3.2 24.6 1.0
HD11 A:LEU164 3.2 49.8 1.0
HG21 A:VAL340 3.3 49.2 1.0
HG13 A:VAL340 3.4 46.4 1.0
HG23 A:VAL161 3.5 27.7 1.0
HG21 A:VAL314 3.5 28.1 1.0
HG13 A:VAL345 3.7 32.2 1.0
HD13 A:LEU164 3.8 49.8 1.0
CB A:ALA310 3.8 23.9 1.0
CD1 A:LEU164 3.8 51.5 1.0
HD12 A:LEU164 3.8 49.7 1.0
CE2 A:PHE160 3.9 23.9 1.0
CG2 A:VAL345 3.9 32.2 1.0
HD2 A:PHE160 4.0 25.1 1.0
HB2 A:ALA310 4.0 23.2 1.0
HB A:VAL340 4.0 47.2 1.0
HB1 A:ALA310 4.1 23.2 1.0
HG23 A:VAL345 4.1 32.0 1.0
CG2 A:VAL340 4.1 50.6 1.0
CG1 A:VAL340 4.2 46.6 1.0
CD2 A:PHE160 4.3 26.5 1.0
HG22 A:VAL314 4.3 28.1 1.0
CG2 A:VAL314 4.3 27.9 1.0
CG2 A:VAL161 4.4 28.2 1.0
CB A:VAL340 4.4 46.4 1.0
HG22 A:VAL161 4.4 27.7 1.0
HG22 A:VAL345 4.4 32.0 1.0
CG1 A:VAL345 4.5 32.4 1.0
HG22 A:VAL340 4.6 49.3 1.0
KR A:KR502 4.6 26.1 0.8
KR A:KR510 4.7 43.5 0.3
HG12 A:VAL340 4.7 46.3 1.0
HG11 A:VAL345 4.7 32.2 1.0
CB A:VAL345 4.7 31.6 1.0
HG21 A:VAL161 4.7 27.7 1.0
HA A:VAL161 4.8 25.9 1.0
HG23 A:VAL340 4.8 49.2 1.0
CZ A:PHE160 4.8 24.8 1.0
HG23 A:VAL314 4.8 28.1 1.0
HB A:VAL345 4.9 31.7 1.0
HG11 A:VAL340 4.9 46.2 1.0
CA A:ALA310 4.9 21.9 1.0
O A:ALA310 4.9 22.3 1.0
HZ A:PHE160 5.0 24.1 1.0

Krypton binding site 4 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 4 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 4 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr504

b:41.1
occ:0.60
HB3 B:GLN63 3.0 20.7 1.0
HB1 A:ALA313 3.2 27.1 1.0
HB3 A:GLU312 3.3 24.5 1.0
H A:ALA313 3.3 25.9 1.0
HA A:ALA313 3.4 27.3 1.0
HG2 A:GLU312 3.4 26.6 1.0
N A:ALA313 3.4 25.3 1.0
O A:PHE309 3.5 18.7 1.0
HG3 B:GLN63 3.6 21.5 1.0
CB B:GLN63 3.7 20.8 1.0
HB2 B:GLN63 3.7 20.6 1.0
CA A:ALA313 3.7 27.7 1.0
CE2 A:PHE309 3.8 19.7 1.0
CG B:GLN63 3.9 21.4 1.0
CB A:ALA313 3.9 26.8 1.0
CD B:GLN63 3.9 22.2 1.0
C A:GLU312 4.0 25.8 1.0
CD2 A:PHE309 4.0 18.4 1.0
CB A:GLU312 4.0 24.7 1.0
CG A:GLU312 4.0 26.5 1.0
HE2 A:PHE309 4.0 20.0 1.0
HA A:PHE309 4.0 17.6 1.0
NE2 B:GLN63 4.1 21.1 1.0
HE22 B:GLN63 4.1 21.4 1.0
CZ A:PHE309 4.1 22.4 1.0
HD2 A:PHE309 4.2 18.4 1.0
CG A:PHE309 4.3 17.1 1.0
C A:PHE309 4.4 19.0 1.0
CE1 A:PHE309 4.4 22.8 1.0
CD A:GLU312 4.4 28.9 1.0
HZ A:PHE309 4.4 21.8 1.0
OE1 B:GLN63 4.5 19.5 1.0
HE21 B:GLN63 4.5 21.4 1.0
HB3 A:ALA313 4.5 27.1 1.0
CA A:GLU312 4.5 22.4 1.0
O A:GLU312 4.5 24.2 1.0
HB2 A:ALA313 4.5 27.1 1.0
CD1 A:PHE309 4.6 18.8 1.0
CA A:PHE309 4.7 17.1 1.0
OE1 A:GLU312 4.7 23.7 1.0
H A:GLU312 4.8 22.1 1.0
HB2 A:GLU312 4.8 24.5 1.0
HG2 B:GLN63 4.9 21.5 1.0
HG3 A:GLU312 4.9 26.6 1.0
HE1 A:PHE309 5.0 21.6 1.0

Krypton binding site 5 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 5 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 5 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr505

b:21.2
occ:0.10
HD11 A:ILE254 2.2 20.0 1.0
HD13 A:ILE254 2.4 20.0 1.0
CD1 A:ILE254 2.5 20.4 1.0
HD12 A:ILE254 2.6 20.0 1.0
HG22 A:ILE204 2.7 15.1 1.0
HG2 A:GLU240 2.8 14.9 1.0
HD13 A:LEU246 2.9 20.4 1.0
HA2 A:GLY241 2.9 14.1 1.0
HD11 A:LEU246 3.2 20.4 1.0
HB3 A:GLU240 3.3 14.6 1.0
CD1 A:LEU246 3.4 20.1 1.0
CG A:GLU240 3.4 14.6 1.0
HD12 A:LEU246 3.5 20.4 1.0
CG2 A:ILE204 3.5 15.4 1.0
CD A:GLU240 3.6 15.7 1.0
HG21 A:ILE204 3.6 15.1 1.0
HA2 A:GLY205 3.6 14.2 1.0
N A:GLY241 3.6 14.0 1.0
CA A:GLY241 3.7 13.9 1.0
C A:GLU240 3.7 14.3 1.0
O A:GLU240 3.7 14.1 1.0
CB A:GLU240 3.8 14.8 1.0
OE2 A:GLU240 3.9 15.3 1.0
HG23 A:ILE204 3.9 15.1 1.0
HG A:SER202 4.0 16.0 0.0
CG1 A:ILE254 4.0 19.1 1.0
H A:GLY241 4.0 14.0 1.0
OE1 A:GLU240 4.0 16.8 1.0
H A:GLY205 4.0 13.3 1.0
N A:GLY205 4.0 13.1 1.0
HA3 A:GLY241 4.1 14.0 1.0
HG13 A:ILE204 4.1 14.1 1.0
CA A:GLY205 4.1 14.4 1.0
HA3 A:GLY205 4.1 14.2 1.0
O A:HOH672 4.3 15.6 1.0
HG3 A:GLU240 4.3 14.9 1.0
HB A:ILE254 4.3 17.1 1.0
CA A:GLU240 4.4 14.2 1.0
OG A:SER202 4.4 16.0 1.0
HG13 A:ILE254 4.4 18.7 1.0
HG21 A:ILE254 4.5 17.1 1.0
HG12 A:ILE254 4.5 18.8 1.0
C A:ILE204 4.5 12.7 1.0
CB A:ILE204 4.6 14.3 1.0
HB2 A:GLU240 4.7 14.6 1.0
CB A:ILE254 4.7 16.5 1.0
CG1 A:ILE204 4.7 14.1 1.0
HB3 A:LEU246 4.8 20.3 1.0
HG12 A:ILE204 4.8 14.0 1.0
CG A:LEU246 4.8 21.5 1.0
O A:HOH645 4.8 22.4 1.0
HD3 A:LYS237 4.9 13.9 1.0
C A:GLY241 4.9 14.3 1.0
HA A:GLU240 4.9 14.3 1.0
O A:ILE204 5.0 14.7 1.0
O A:LYS237 5.0 12.9 1.0

Krypton binding site 6 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 6 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 6 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr506

b:23.4
occ:0.37
HG23 A:ILE67 2.8 15.9 1.0
HE2 A:TYR189 2.8 20.4 1.0
HG21 A:THR188 3.1 16.9 1.0
HG22 A:ILE67 3.1 15.9 1.0
HG2 A:LYS184 3.1 15.9 1.0
O A:GLU64 3.1 16.6 1.0
HE2 A:LYS184 3.3 16.4 1.0
CG2 A:ILE67 3.4 16.1 1.0
HA A:ALA65 3.4 15.3 1.0
HB A:THR188 3.4 15.6 1.0
OG1 A:THR188 3.5 14.5 1.0
CE2 A:TYR189 3.6 20.9 1.0
HA A:TYR185 3.6 13.7 1.0
C A:ALA65 3.7 14.6 1.0
O A:ALA65 3.8 16.8 1.0
CB A:THR188 3.8 14.8 1.0
HD3 A:LYS184 3.8 16.1 1.0
CG2 A:THR188 3.8 17.9 1.0
HH A:TYR189 3.8 21.1 0.0
HG21 A:ILE67 3.9 15.9 1.0
CG A:LYS184 3.9 16.1 1.0
CA A:ALA65 4.0 14.7 1.0
HG21 A:THR47 4.0 20.0 1.0
O A:CYS66 4.0 15.3 1.0
O A:LYS184 4.0 14.5 1.0
C A:GLU64 4.0 15.4 1.0
O A:HOH626 4.1 15.9 1.0
HA A:ILE67 4.1 15.1 1.0
CE A:LYS184 4.1 16.6 1.0
CD A:LYS184 4.1 15.9 1.0
OH A:TYR189 4.1 21.0 1.0
N A:CYS66 4.2 14.9 1.0
C A:CYS66 4.2 16.0 1.0
HG1 A:THR188 4.2 14.6 0.0
CZ A:TYR189 4.3 20.6 1.0
HD2 A:TYR189 4.3 19.2 1.0
C A:LYS184 4.3 14.7 1.0
CD2 A:TYR189 4.3 19.2 1.0
HG23 A:THR188 4.3 16.9 1.0
H A:CYS66 4.4 14.8 1.0
N A:ILE67 4.4 15.4 1.0
HB3 A:LYS184 4.4 15.2 1.0
N A:ALA65 4.5 16.3 1.0
CA A:TYR185 4.5 14.0 1.0
HG22 A:THR188 4.5 16.9 1.0
HZ1 A:LYS184 4.5 16.6 1.0
N A:TYR185 4.5 13.5 1.0
CB A:ILE67 4.6 15.4 1.0
HG3 A:LYS184 4.6 15.9 1.0
CA A:ILE67 4.6 15.4 1.0
CB A:LYS184 4.7 15.2 1.0
CA A:CYS66 4.8 14.6 1.0
HE3 A:LYS184 4.8 16.4 1.0
NZ A:LYS184 4.9 16.6 1.0
H A:ILE67 4.9 15.5 1.0
CG2 A:THR47 4.9 20.4 1.0
HG13 B:VAL99 5.0 17.8 1.0
HB A:ILE67 5.0 15.5 1.0

Krypton binding site 7 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 7 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 7 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr507

b:29.9
occ:0.50
O A:HOH667 2.4 29.4 1.0
HA A:GLN135 3.1 18.0 1.0
HB2 A:PHE139 3.3 15.4 1.0
H A:CYS142 3.4 16.1 1.0
HB2 A:CYS142 3.5 16.8 1.0
O A:PHE139 3.5 17.5 1.0
N A:CYS142 3.5 15.9 1.0
HA A:HIS141 3.6 16.1 1.0
HB2 A:GLN135 3.6 20.5 1.0
C A:HIS141 3.7 16.1 1.0
N A:GLN135 3.7 16.6 1.0
CA A:GLN135 3.8 18.0 1.0
HB3 A:LEU134 3.8 15.8 1.0
HB3 A:PHE139 3.8 15.4 1.0
HB2 A:LEU134 3.9 15.8 1.0
O A:HOH708 3.9 19.1 1.0
C A:LEU134 4.0 15.3 1.0
CB A:PHE139 4.0 15.9 1.0
H A:GLN135 4.0 16.6 1.0
CA A:HIS141 4.0 15.9 1.0
O A:HIS141 4.1 15.7 1.0
CB A:GLN135 4.1 20.1 1.0
CB A:CYS142 4.1 16.3 1.0
O A:LEU134 4.1 16.2 1.0
HB3 A:CYS142 4.1 16.8 1.0
C A:PHE139 4.1 17.2 1.0
N A:HIS141 4.2 15.9 1.0
HG2 A:GLN135 4.2 24.4 1.0
CB A:LEU134 4.3 15.8 1.0
O A:HOH684 4.3 26.6 1.0
CA A:CYS142 4.4 16.4 1.0
C A:ALA140 4.5 17.1 1.0
H A:HIS141 4.5 16.2 1.0
CA A:PHE139 4.6 15.9 1.0
O A:ALA140 4.6 18.4 1.0
HA A:CYS142 4.6 16.2 1.0
CG A:GLN135 4.7 24.7 1.0
O A:LEU131 4.7 19.0 1.0
CA A:LEU134 4.7 15.3 1.0
HB2 A:ALA104 4.8 15.4 1.0
H A:PHE139 4.9 16.5 1.0
HB3 A:GLN135 5.0 20.6 1.0

Krypton binding site 8 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 8 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 8 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr508

b:24.2
occ:0.10
HE2 A:PHE372 2.2 28.3 1.0
CE2 A:PHE372 2.7 28.9 1.0
HA2 A:GLY157 2.8 22.5 1.0
HB2 A:PHE160 2.8 22.3 1.0
HB3 A:PHE160 2.9 22.4 1.0
HZ A:PHE372 3.0 27.5 1.0
HB3 A:ALA306 3.0 18.4 1.0
CZ A:PHE372 3.1 27.5 1.0
HG2 A:GLU156 3.2 21.1 1.0
CB A:PHE160 3.2 22.6 1.0
O A:GLU156 3.3 19.8 1.0
HD2 A:PHE160 3.5 25.1 1.0
CD2 A:PHE372 3.5 28.2 1.0
CA A:GLY157 3.6 22.8 1.0
C A:GLU156 3.7 20.1 1.0
CG A:PHE160 3.8 23.8 1.0
HD2 A:PHE372 3.8 27.4 1.0
N A:GLY157 3.8 21.6 1.0
HB1 A:ALA306 3.8 18.4 1.0
CB A:ALA306 3.9 19.0 1.0
CD2 A:PHE160 3.9 26.5 1.0
KR A:KR501 3.9 24.1 0.4
CG A:GLU156 4.1 20.9 1.0
CE1 A:PHE372 4.2 26.4 1.0
KR A:KR502 4.2 26.1 0.8
HA3 A:GLY157 4.2 22.5 1.0
H A:PHE160 4.3 20.4 1.0
HB2 A:ALA306 4.3 18.4 1.0
OE1 A:GLN174 4.4 25.0 1.0
H A:GLY157 4.4 21.4 1.0
HB3 A:GLU156 4.5 18.6 1.0
O A:GLY157 4.5 24.4 1.0
C A:GLY157 4.6 23.0 1.0
CG A:PHE372 4.6 24.5 1.0
HG3 A:GLU156 4.6 21.1 1.0
CA A:PHE160 4.6 20.1 1.0
CB A:GLU156 4.7 18.4 1.0
HE1 A:PHE372 4.8 26.3 1.0
CD1 A:PHE372 4.8 24.8 1.0
N A:PHE160 4.8 20.5 1.0
CA A:GLU156 4.8 17.0 1.0
CD1 A:PHE160 4.8 22.6 1.0
CD A:GLU156 4.9 24.6 1.0
HA A:ALA306 4.9 17.3 1.0
OE2 A:GLU156 4.9 22.6 1.0
CE2 A:PHE160 5.0 23.9 1.0
CA A:ALA306 5.0 17.0 1.0

Krypton binding site 9 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 9 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 9 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr509

b:17.4
occ:0.10
HG12 A:VAL327 2.3 23.5 1.0
HG22 A:VAL349 3.0 19.3 1.0
HG22 A:VAL347 3.0 23.6 1.0
O A:LYS334 3.0 30.5 1.0
HA A:GLU335 3.0 33.7 1.0
HA A:VAL327 3.1 23.6 1.0
C A:LYS334 3.2 29.7 1.0
CG1 A:VAL327 3.3 23.6 1.0
HA A:ALA348 3.3 22.5 1.0
C A:GLU335 3.4 34.0 1.0
H A:ALA336 3.4 31.1 1.0
CA A:GLU335 3.4 32.7 1.0
N A:GLU335 3.4 33.7 1.0
HB2 A:LYS334 3.4 24.7 1.0
N A:ALA336 3.4 29.7 1.0
HB A:VAL349 3.5 19.1 1.0
HB3 A:LYS334 3.5 24.7 1.0
H A:VAL349 3.5 19.6 1.0
HB1 A:ALA336 3.5 30.7 1.0
HB2 A:ALA336 3.5 30.7 1.0
CG2 A:VAL349 3.7 19.5 1.0
O A:VAL347 3.8 26.2 1.0
HG21 A:VAL349 3.8 19.3 1.0
HG11 A:VAL327 3.8 23.5 1.0
HB A:VAL327 3.8 23.6 1.0
HG13 A:VAL327 3.8 23.5 1.0
CB A:LYS334 3.8 24.9 1.0
N A:VAL349 3.8 19.5 1.0
CG2 A:VAL347 3.9 23.6 1.0
CB A:VAL327 3.9 23.5 1.0
CB A:ALA336 3.9 30.4 1.0
O A:GLU335 3.9 32.1 1.0
CA A:VAL327 3.9 23.2 1.0
H A:GLU335 4.0 32.4 1.0
CA A:ALA348 4.0 22.5 1.0
CB A:VAL349 4.1 18.9 1.0
HG23 A:VAL347 4.1 23.6 1.0
CA A:LYS334 4.1 27.7 1.0
C A:ALA348 4.1 20.4 1.0
C A:VAL347 4.2 24.8 1.0
HG21 A:VAL347 4.2 23.6 1.0
CA A:ALA336 4.3 31.5 1.0
N A:ALA348 4.4 22.0 1.0
O A:ALA326 4.4 31.8 1.0
HG2 A:MET303 4.5 19.9 1.0
HG23 A:VAL349 4.5 19.3 1.0
CA A:VAL349 4.6 18.9 1.0
N A:VAL327 4.7 24.6 1.0
HA A:LYS334 4.8 27.0 1.0
HB3 A:ALA336 4.8 30.7 1.0
C A:ALA326 4.8 31.4 1.0
H A:LYS334 4.9 25.9 1.0
O A:ALA348 4.9 19.7 1.0
CB A:GLU335 4.9 37.4 1.0
HE3 A:LYS334 4.9 20.9 1.0
HA A:ALA336 4.9 31.0 1.0
CB A:VAL347 5.0 23.5 1.0

Krypton binding site 10 out of 10 in 8rxj

Go back to Krypton Binding Sites List in 8rxj
Krypton binding site 10 out of 10 in the Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton


Mono view


Stereo pair view

A full contact list of Krypton with other atoms in the Kr binding site number 10 of Desulfovibrio Desulfuricans [Fefe] Hydrogenase C178A Mutant in Hinact- Like State Derivatized with Krypton within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Kr510

b:43.5
occ:0.30
HG23 A:VAL340 2.4 49.2 1.0
HG21 A:VAL340 2.6 49.2 1.0
CG2 A:VAL340 2.9 50.6 1.0
HD22 A:LEU307 3.1 22.6 1.0
HB2 A:TYR311 3.1 25.8 1.0
HG11 A:VAL340 3.1 46.2 1.0
HD21 A:LEU307 3.2 22.5 1.0
HG13 A:VAL340 3.3 46.4 1.0
HB2 A:ALA310 3.3 23.2 1.0
HA A:TYR311 3.3 23.5 1.0
HG13 A:VAL338 3.3 39.6 1.0
HG12 A:VAL338 3.4 39.7 1.0
HA A:LEU307 3.5 18.2 1.0
CG1 A:VAL340 3.5 46.6 1.0
CD2 A:LEU307 3.6 23.2 1.0
H A:TYR311 3.6 21.4 1.0
O A:LEU307 3.6 16.8 1.0
HG22 A:VAL340 3.6 49.3 1.0
HD2 A:TYR311 3.6 31.5 1.0
N A:TYR311 3.7 20.7 1.0
CA A:TYR311 3.8 23.4 1.0
CB A:VAL340 3.8 46.4 1.0
HB3 A:LEU307 3.8 19.6 1.0
CB A:TYR311 3.8 25.8 1.0
CG1 A:VAL338 3.9 40.7 1.0
HB3 A:ALA310 4.0 23.3 1.0
CB A:ALA310 4.1 23.9 1.0
CA A:LEU307 4.2 18.8 1.0
C A:ALA310 4.2 21.4 1.0
HD23 A:LEU307 4.3 22.5 1.0
C A:LEU307 4.3 17.7 1.0
CB A:LEU307 4.3 19.5 1.0
CD2 A:TYR311 4.4 31.8 1.0
HG12 A:VAL340 4.5 46.3 1.0
HB A:VAL340 4.5 47.2 1.0
HE2 A:PHE324 4.5 20.2 1.0
HZ A:PHE324 4.5 20.0 1.0
HG11 A:VAL338 4.5 39.7 1.0
HB A:VAL338 4.5 36.9 1.0
HB3 A:TYR311 4.6 25.7 1.0
HA A:VAL340 4.6 46.7 1.0
CG A:LEU307 4.6 20.9 1.0
CG A:TYR311 4.6 28.2 1.0
KR A:KR503 4.7 37.9 0.6
CA A:VAL340 4.7 46.8 1.0
CA A:ALA310 4.8 21.9 1.0
O A:ALA310 4.8 22.3 1.0
HB1 A:ALA310 4.8 23.2 1.0
CB A:VAL338 4.8 37.7 1.0
CE2 A:PHE324 4.9 19.8 1.0
CZ A:PHE324 4.9 20.4 1.0
O A:ASN339 4.9 45.2 1.0
HG21 A:VAL345 4.9 32.0 1.0

Reference:

K.Bikbaev, T.Harand, L.Scheuenstuhl, P.Carpentier, M.A.Martini, J.A.Birrell, I.Span. Krypton Derivatization of [Fefe] Hydrogenase From Desulfovibrio Desulfuricans Reveals Its Gas Channel To Be Published.
Page generated: Tue Feb 25 10:21:25 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy